TCONS_00045792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045792
Unique NameTCONS_00045792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045792 ID=TCONS_00045792|Name=TCONS_00045792|organism=Clytia hemisphaerica|type=transcript|length=300bp
GCTTTGAAGTCAGGAATGTCAGTATTATTCCATATGTAGATGCCCCAGGC
TCCGCATTGCAAGATTCTACTGTGCAGTTGAGATATTTGGTCAAGTCAAT
GCTGTATGAACCCTGTTTTATAGTTTGGGCTTTCTCACCGGTACAAAATC
GTTTGATTCGACTAAGCGAAGAGAACTACACTCAATTTATCGAGACCCAA
TTCCAAGCAGTTACGCAAACAGACGAAAATGATTTGCTGGAGCTTTTGTT
AAATATACGTCATCACAACGATAATAATATGCAAACTCTTTTTTTCGTGT
Run BLAST on NCBI

protein sequence of TCONS_00045792-protein

>TCONS_00045792-protein ID=TCONS_00045792-protein|Name=TCONS_00045792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
FEVRNVSIIPYVDAPGSALQDSTVQLRYLVKSMLYEPCFIVWAFSPVQNR
LIRLSEENYTQFIETQFQAVTQTDENDLLELLLNIRHHNDNNMQTLFFV
Run BLAST on NCBI

transcript from alignment at scaffold_100:730357..730656

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045792 ID=TCONS_00045792|Name=TCONS_00045792|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at scaffold_100:730357..730656 (Clytia hemisphaerica)
ACACGAAAAAAAGAGTTTGCATATTATTATCGTTGTGATGACGTATATTT
AACAAAAGCTCCAGCAAATCATTTTCGTCTGTTTGCGTAACTGCTTGGAA
TTGGGTCTCGATAAATTGAGTGTAGTTCTCTTCGCTTAGTCGAATCAAAC
GATTTTGTACCGGTGAGAAAGCCCAAACTATAAAACAGGGTTCATACAGC
ATTGACTTGACCAAATATCTCAACTGCACAGTAGAATCTTGCAATGCGGA
GCCTGGGGCATCTACATATGGAATAATACTGACATTCCTGACTTCAAAGC

Coding sequence (CDS) from alignment at scaffold_100:730357..730656

>TCONS_00045792 ID=TCONS_00045792|Name=TCONS_00045792|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_100:730357..730656 (Clytia hemisphaerica)
CACGAAAAAAAGAGTTTGCATATTATTATCGTTGTGATGACGTATATTTA
ACAAAAGCTCCAGCAAATCATTTTCGTCTGTTTGCGTAACTGCTTGGAAT
TGGGTCTCGATAAATTGAGTGTAGTTCTCTTCGCTTAGTCGAATCAAACG
ATTTTGTACCGGTGAGAAAGCCCAAACTATAAAACAGGGTTCATACAGCA
TTGACTTGACCAAATATCTCAACTGCACAGTAGAATCTTGCAATGCGGAG
CCTGGGGCATCTACATATGGAATAATACTGACATTCCTGACTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029269XLOC_029269Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045792-proteinTCONS_00045792-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045792-exon-scaffold_100-1491911889:730357..730656TCONS_00045792-exon-scaffold_100-1491911889:730357..730656Clytia hemisphaericaexon
TCONS_00045792-exon-scaffold_100-1510915933:730357..730656TCONS_00045792-exon-scaffold_100-1510915933:730357..730656Clytia hemisphaericaexon
TCONS_00045792-exon-scaffold_100-1575043694:730357..730656TCONS_00045792-exon-scaffold_100-1575043694:730357..730656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:730357..730656 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50706	0.687026	1.11103	0.518185	4.07807	3.42961	2.15201	2.12682	1.06353	3.19603	6.41741	1.15717	13.1254	13.2639	3.78359	7.96153	0.350511	3.3317	20.6877	10.6116	2.68531	3.16329	1.94571	0.668592	0	1.86527	1.59693	2.0864	8.45164	6.97689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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