TCONS_00045780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045780
Unique NameTCONS_00045780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045780 ID=TCONS_00045780|Name=TCONS_00045780|organism=Clytia hemisphaerica|type=transcript|length=656bp
gtTGTTGAAgaccagaattgaaaacaagatggcagACTAGTCAGCTCTTA
AACTAGACACGCTTCCTATATACGGGTACCCCGATCCAGTCAAATAGTTA
GAGGTCATTGAATATAAAGCTTAAACTTAGTCTTCTTGGTAACTCATATT
GCCATTTTGCTGGCGACTTATTTTCCGGCTCTTTTTCTCCGCATTCTTCA
AAACAAGTTGTCCGTTCTTCACTTCCATGGTTGTTGAAACAACACTCACT
TTCTTTTTCATGTCTTTATAACTAGCCGTATTTTTACGTCCGCCTTCCGA
AAACTTGCGCCCGCCAGTATCAAAAGATATTTGTTTGACCATTCTACGAC
CGCCCTCACTTGTTTTAGAACCACTTGAGTCAGTCGAGATTTGTCGTATG
GGACCTGCCATTGAGTTACGGCTTGGGATGAAATTAACTGTActgaaatt
cgattgttgacTTATTTTACGATGATGTTGTTGGCTTATTCTTTGATGCT
GCAAACTTGTTTTTCGAAGTGACTGGTTACTTCTTGTCGAATCTCTTGAA
TAGTTAGAGCGAGTTTTACTGTCTAGGATGAAATACACGATTGGAGATAT
GACGTGATTAATGAATATTGATAGTCCACACCATATCACTAGTTCCAGAC
TTTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_100:363844..364499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045780 ID=TCONS_00045780|Name=TCONS_00045780|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_100:363844..364499 (Clytia hemisphaerica)
ACAAAAGTCTGGAACTAGTGATATGGTGTGGACTATCAATATTCATTAAT
CACGTCATATCTCCAATCGTGTATTTCATCCTAGACAGTAAAACTCGCTC
TAACTATTCAAGAGATTCGACAAGAAGTAACCAGTCACTTCGAAAAACAA
GTTTGCAGCATCAAAGAATAAGCCAACAACATCATCGTAAAATAAgtcaa
caatcgaatttcagTACAGTTAATTTCATCCCAAGCCGTAACTCAATGGC
AGGTCCCATACGACAAATCTCGACTGACTCAAGTGGTTCTAAAACAAGTG
AGGGCGGTCGTAGAATGGTCAAACAAATATCTTTTGATACTGGCGGGCGC
AAGTTTTCGGAAGGCGGACGTAAAAATACGGCTAGTTATAAAGACATGAA
AAAGAAAGTGAGTGTTGTTTCAACAACCATGGAAGTGAAGAACGGACAAC
TTGTTTTGAAGAATGCGGAGAAAAAGAGCCGGAAAATAAGTCGCCAGCAA
AATGGCAATATGAGTTACCAAGAAGACTAAGTTTAAGCTTTATATTCAAT
GACCTCTAACTATTTGACTGGATCGGGGTACCCGTATATAGGAAGCGTGT
CTAGTTTAAGAGCTGACTAGTctgccatcttgttttcaattctggtcTTC
AACAac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029257XLOC_029257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045780-exon-scaffold_100-1491911889:363844..364499TCONS_00045780-exon-scaffold_100-1491911889:363844..364499Clytia hemisphaericaexon
TCONS_00045780-exon-scaffold_100-1510915933:363844..364499TCONS_00045780-exon-scaffold_100-1510915933:363844..364499Clytia hemisphaericaexon
TCONS_00045780-exon-scaffold_100-1575043694:363844..364499TCONS_00045780-exon-scaffold_100-1575043694:363844..364499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:363844..364499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0448307	0.0992553	0.833648	0.589589	0.656695	0.506986	0.0432277	0.149488	0.171928	0.473193	0.321644	0	2.88404	1.46145	0.00584456	0.331446	0.0245538	0.984324	6.14179	1.98609	2.49454	3.28166	1.12953	0.577233	21.504	9.41049	2.08188	1.34254	0.138359	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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