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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045776 ID=TCONS_00045776|Name=TCONS_00045776|organism=Clytia hemisphaerica|type=transcript|length=1396bp
GCACAACTTTCAGTTGTGAAACTTACTTTATGGGGTGTGATTGATCGCAC
TCCTCAgacattttaggtgtgtgtggaggtgtgcgcgtgctatcgcacac
ctcaaatgatgcagcctgaaGGAAATTGAAACATTAAAACAGTAAATCTA
TTgctaaaacttttcattttattgatttttcaacGATTTCAACAAGAACA
CAAGATCATTCGCGAAATGTGATTGGTCAATATCTTTATAAGATGGAAAC
TGGTTAATGTCAATCAATGCGTAATTATTAGTCTCTCGCTCAACCAAAAT
ATCAAATCCGTATAAATAAAGACCCGAAATATTATGCATGCGAGTTATAA
TTTCTTCAATAATTTCGGAATCAAGTAAATCCGATTTTTCATCCGAAGTC
ATCCAGCATCTTTGATTCGGGTTAACTCCGTGTAACTCTTCATGGAATTG
TTGACCCGTTTTGGAAACTTGAAACGAATTAAACACGATATTTGAGTTCG
TTCGTAACTCGCTCATTTTCTCGTTCAAATTCNAACTTGAAACGAATTAA
ACACAATATTTGAGTTCGTTCGTAACTCGCTCATTTTCTCGTTCAAATTC
TGAATGGAAGGACGTTCGCAAATATGATATCGTGTGCCGATAACAAAAAC
TTTATAACACTTTCCACTGTGATTACAAAACTCTTGTATTAAACAAGGTT
TCTTGATCTTTTTCAGTCCATCCATGTTGAACACCACACTCATTAAATGA
GCGCCATTATCAAAATAAGCAGAGTACGGTTTCACGACAACCGGGAATTG
AAAATATCGTTCGTTCATCTCCGCCTTGATATTCGTGAACGAGTATTTCT
CGgcaacatccaaagtttttggtAAAAACACATTGATATCTTTCAAAGTA
AAAGTACATTTTCGTATCAAATCAATCATCAACTTTCGATTGGTTAAGCG
CCAACAAAACTCTAGATTATCCACGACGATAATTTCAGGGTGAGTCTTTG
TGTATTCAACAAAATCATCAATCTTTTGTTCAGCTTTCTCGACACCAACC
TCCTTATCGTTATAATGATCCAAAATTTTatgcaaaataaaatcaaaagg
tCCTTGAGCTTCAATACACTGTTCGACATCGATATTAACAACTTTTATGT
TCGCTTTCTTGCAAGCTTCCAAAATTCGATCGGGTAGATTCATCCGCATG
GCTTTTCCTTTCGGGACACATAAGCCCAATCTCAAAGGTAACATTTTata
cttgattttttttcgtttttattttctctttttttctataGAGTAAAAGA
AACGGTTGATTAGTCAGTTTGgaagaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaac Run BLAST on NCBI protein sequence of TCONS_00045776-protein >TCONS_00045776-protein ID=TCONS_00045776-protein|Name=TCONS_00045776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MLPLRLGLCVPKGKAMRMNLPDRILEACKKANIKVVNIDVEQCIEAQGPF
DFILHKILDHYNDKEVGVEKAEQKIDDFVEYTKTHPEIIVVDNLEFCWRL
TNRKLMIDLIRKCTFTLKDINVFLPKTLDVAEKYSFTNIKAEMNERYFQF
PVVVKPYSAYFDNGAHLMSVVFNMDGLKKIKKPCLIQEFCNHSGKCYKVF
VIGTRYHICERPSIQNLNEKMSELRTNSNIVFNSFQVXI Run BLAST on NCBI transcript from alignment at scaffold_100:244466..245861 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045776 ID=TCONS_00045776|Name=TCONS_00045776|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at scaffold_100:244466..245861 (Clytia hemisphaerica)
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcttcCAAACTGACTAATCAACCGTTTCTT
TTACTCtatagaaaaaaagagaaaataaaaacgaaaaaaaatcaagtatA
AAATGTTACCTTTGAGATTGGGCTTATGTGTCCCGAAAGGAAAAGCCATG
CGGATGAATCTACCCGATCGAATTTTGGAAGCTTGCAAGAAAGCGAACAT
AAAAGTTGTTAATATCGATGTCGAACAGTGTATTGAAGCTCAAGGacctt
ttgattttattttgcatAAAATTTTGGATCATTATAACGATAAGGAGGTT
GGTGTCGAGAAAGCTGAACAAAAGATTGATGATTTTGTTGAATACACAAA
GACTCACCCTGAAATTATCGTCGTGGATAATCTAGAGTTTTGTTGGCGCT
TAACCAATCGAAAGTTGATGATTGATTTGATACGAAAATGTACTTTTACT
TTGAAAGATATCAATGTGTTTTTaccaaaaactttggatgttgcCGAGAA
ATACTCGTTCACGAATATCAAGGCGGAGATGAACGAACGATATTTTCAAT
TCCCGGTTGTCGTGAAACCGTACTCTGCTTATTTTGATAATGGCGCTCAT
TTAATGAGTGTGGTGTTCAACATGGATGGACTGAAAAAGATCAAGAAACC
TTGTTTAATACAAGAGTTTTGTAATCACAGTGGAAAGTGTTATAAAGTTT
TTGTTATCGGCACACGATATCATATTTGCGAACGTCCTTCCATTCAGAAT
TTGAACGAGAAAATGAGCGAGTTACGAACGAACTCAAATATTGTGTTTAA
TTCGTTTCAAGTTNGAATTTGAACGAGAAAATGAGCGAGTTACGAACGAA
CTCAAATATCGTGTTTAATTCGTTTCAAGTTTCCAAAACGGGTCAACAAT
TCCATGAAGAGTTACACGGAGTTAACCCGAATCAAAGATGCTGGATGACT
TCGGATGAAAAATCGGATTTACTTGATTCCGAAATTATTGAAGAAATTAT
AACTCGCATGCATAATATTTCGGGTCTTTATTTATACGGATTTGATATTT
TGGTTGAGCGAGAGACTAATAATTACGCATTGATTGACATTAACCAGTTT
CCATCTTATAAAGATATTGACCAATCACATTTCGCGAATGATCTTGTGTT
CTTGTTGAAATCgttgaaaaatcaataaaatgaaaagttttagcAATAGA
TTTACTGTTTTAATGTTTCAATTTCCttcaggctgcatcatttgaggtgt
gcgatagcacgcgcacacctccacacacacctaaaatgtcTGAGGAGTGC
GATCAATCACACCCCATAAAGTAAGTTTCACAACTGAAAGTTGTGC Coding sequence (CDS) from alignment at scaffold_100:244466..245861 >TCONS_00045776 ID=TCONS_00045776|Name=TCONS_00045776|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_100:244466..245861 (Clytia hemisphaerica)
ATGTTACCTTTGAGATTGGGCTTATGTGTCCCGAAAGGAAAAGCCATGCG
GATGAATCTACCCGATCGAATTTTGGAAGCTTGCAAGAAAGCGAACATAA
AAGTTGTTAATATCGATGTCGAACAGTGTATTGAAGCTCAAGGacctttt
gattttattttgcatAAAATTTTGGATCATTATAACGATAAGGAGGTTGG
TGTCGAGAAAGCTGAACAAAAGATTGATGATTTTGTTGAATACACAAAGA
CTCACCCTGAAATTATCGTCGTGGATAATCTAGAGTTTTGTTGGCGCTTA
ACCAATCGAAAGTTGATGATTGATTTGATACGAAAATGTACTTTTACTTT
GAAAGATATCAATGTGTTTTTaccaaaaactttggatgttgcCGAGAAAT
ACTCGTTCACGAATATCAAGGCGGAGATGAACGAACGATATTTTCAATTC
CCGGTTGTCGTGAAACCGTACTCTGCTTATTTTGATAATGGCGCTCATTT
AATGAGTGTGGTGTTCAACATGGATGGACTGAAAAAGATCAAGAAACCTT
GTTTAATACAAGAGTTTTGTAATCACAGTGGAAAGTGTTATAAAGTTTTT
GTTATCGGCACACGATATCATATTTGCGAACGTCCTTCCATTCAGAATTT
GAACGAGAAAATGAGCGAGTTACGAACGAACTCAAATATTGTGTTTAATT
CGTTTCAAGTTNGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045776-exon-scaffold_100-1491911889:244466..245861 | TCONS_00045776-exon-scaffold_100-1491911889:244466..245861 | Clytia hemisphaerica | exon |
| TCONS_00045776-exon-scaffold_100-1510915933:244466..245861 | TCONS_00045776-exon-scaffold_100-1510915933:244466..245861 | Clytia hemisphaerica | exon |
| TCONS_00045776-exon-scaffold_100-1575043694:244466..245861 | TCONS_00045776-exon-scaffold_100-1575043694:244466..245861 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:244466..245861 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008656 | Inositol_tetrakis-P_1-kinase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0052726 | inositol-1,3,4-trisphosphate 5-kinase activity |
| GO:0052725 | inositol-1,3,4-trisphosphate 6-kinase activity |
| GO:0005524 | ATP binding |
| GO:0000287 | magnesium ion binding |
| GO:0047325 | inositol tetrakisphosphate 1-kinase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032957 | inositol trisphosphate metabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032957 |
inositol trisphosphate metabolic process |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0052726 |
inositol-1,3,4-trisphosphate 5-kinase activity |
| molecular_function |
GO:0052725 |
inositol-1,3,4-trisphosphate 6-kinase activity |
| molecular_function |
GO:0047325 |
inositol tetrakisphosphate 1-kinase activity |
| molecular_function |
GO:0000287 |
magnesium ion binding |
Blast
BLAST of TCONS_00045776 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 1.199e-31 Identity = 73/233 (31.33%), Postives = 124/233 (53.22%), Query Frame = -3
Query: 534 RLGLCVPKGKAMRMNLPDRILEACKKANIKVVNIDVEQCIEAQGPFDFILHKILDHYNDKEVGVEKAEQKIDDFVEYTKTHPEIIVVDNLEFCWRLTNRKLMIDLIRKCTFTLKDINVFLPKTLDVAEKYSFTNIKAEMNERYFQFPVVVKPYSAYFDNGAHLMSVVFNMDGLKKIKKPCLIQEFCNHSGKCYKVFVIGTRYHICERPSIQNLNEKMSELRTNSNIVFNSFQV 1232
R+G + + K ++N E C+K ++VV +++ + IE QGP D I+HK+ D + + ++ + + F EY HPE IV+D L L +R +LIRK ++D + P +++ ++ + + FP + K A+ N +H M++VFN +GL I+ PC++Q F NH+ YKVFV+G Y + +RPS++N + S+ +I FNS V
Sbjct: 9 RVGYWLSEKKIKKLNF-QAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRL-LEKNGLTFPFICKTRVAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSD---RESIFFNSHNV 235
The following BLAST results are available for this feature:
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