TCONS_00045739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045739
Unique NameTCONS_00045739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045739 ID=TCONS_00045739|Name=TCONS_00045739|organism=Clytia hemisphaerica|type=transcript|length=373bp
AGATGACATGATTATAAAACCATGCTGGAGTAATTacaAAATTGTAAATC
TGAACAACTTTCCAAGACCAGAGTGTTCTTTCTTAACTTGTCATGGTTTG
GAATGAATGTTATGTATCTGATTCTGTCAGTCGAAGTGGTGCCCTCACAA
GTACATGCATTGGTGGGCTCAGAAATGAAAGGACAAATGTTTGGTGCCAT
GGTGGCAAGTGGAGCAATTGTGACGTTTATTATAAGTCCCCTTATTGGAA
TTAAAAGTGATCGTTTACAATCCCCGTATGGCAGAAGAAGGCCTTTGATG
GTGGCGGGCACTGTCCTATTGATacTCAGTTTGTTTGGGATGGCTTTCAG
TGCACCAGAAAGTATAAGGTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_100:602484..605644-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045739 ID=TCONS_00045739|Name=TCONS_00045739|organism=Clytia hemisphaerica|type=transcript|length=3161bp|location=Sequence derived from alignment at scaffold_100:602484..605644- (Clytia hemisphaerica)
AGATGACATGATTATAAAACCATGCTGGAGTAATTACAGTAAGTTGGTCT
AATGTCGACATCCTTCTTTTAATTTCAACACCCAGTTTTAGAGATTAGGA
ATGATAGGAAGGTCAAGATCACTGATAGATTAAAGATTTTATTTTTTACG
TTCTCATTGCTAAGCAAAGAAAAAAGTCACCCTAAAAGAGAATGGCAAAA
TTAGAAGAGGGATCTGGACATTAAACTAATTTACGGTATATTTGATAAAC
TGTCGTGTTCTTCTATAATCAAATGCTCTGGTAGTAAGATGGTCTCCGCT
TTTAAATGCTTATAAATAATTTTTCTTGACATCCTACTAGATGAAGGAAT
ACCTTTTTTACCACAAATGCTGTAAAAACGTCGATTTTACATTTTTCTTA
AACTGTAATTGTAGAACTCATGAATAAATCAAACAAAAGGCAATTTTTGT
ACAAAACTAGTGACATCTTTTTAACTCGCACACAGGTGAAATGTTTTTTG
TAGATAAGATTTTTTCAGTTATGAAAACTGTGCCTTAATTTCCATATACT
ACAATGGAGAAAATCCTGTGACTATTAAAGTTAATTTCTTATTAACTCTA
CATAATTATTCCTAACTTGGTAGTTACTGAGTAATTTAATAGATTTTTTG
CTAGTCAGGATGTCATGTTGAATAATTAAAAAGTCCAATATTAAAACAAT
GACACATAAATGCATAATTACTTTTGCGTCCACTATTTTTTTTTTTTTTT
TAATAAAATAAATTGCTAGTCCAATTTCATTGATGAATAAATAAATCCTT
TCATTGTTTTGATGCTTGAGTTTTTCATTATTCATCCTGACATCCTGACT
TGCAAAAGTCTATTTAACTCTATGACTTTTAGTCTCAATGATNTCCTGAC
ATCCTGACTTGCAAAAGTCTATTTAACTCTACGATTTTAGTCTCAATGAA
TGTTGAATTGTATAAGTATAAAGGAGGTCCGTTGATAAATTTCATTAAAA
AAATATTCTGTTTACATTTAGAAATTGTAAATCTGAACAACTTTCCAAGA
CCAGAGTGTTCTTTCTTAACTTGTCATGGTTTGGAATGAATGTTATGTAT
CTGATTCTGTCAGTCGAAGGTATGCACTGAAAAATGTTTTAGTACATTGT
GTATTGTTATTTATGATATATTTTATGATTTTATTCACTTTGGAGTCTTA
TTTTCACAATGCATTAATTGTCATTTTTTGTTTTTTTATTCATTATTAGT
GGTGCCCTCACAAGTACATGCATTGGTGGGCTCAGAAATGAAAGGACAAA
TGTTTGGTGCCATGGTGGCAAGTGGAGCAAGTAAACTGATTTTTCTTTTT
GAGAATATAAGCTAATGAATTGACTACAGGGTGTCTTGTAAAAAAGTACT
CTTTTAGACTACTTCCAAGTAGAAAAAAATTGTTTGTGTATAACAAAATC
TGGGTTTGATATGAGAACATCTTTAGACCTCTTAACATCTTAAAATTATT
TCCATATTGTCAATTAAAGTTTATAGGTTTTTTCTGTTTCATTGTTTCAT
TGTTGCATTGTTGTGATTAGTAAATAATTGAGTTTCGATTCTTTATAAAA
AGCTTGCTTTATTTATTTTCTAGTTGTGACGTTTATTATAAGTCCCCTTA
TTGGAATTAAAAGGTATTTATATTTCATAAACAATACGTCAAAATAATTT
GAAAATGTATGATGTGAAATCTCAACTTTATTACTTAGAGGACATTTTCT
GCAGACAAAATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTGAAACTA
ATTTTTTTGAAATCTAAAAATTTTAAAAGAACCATTCCTATTTTATTGGA
AAGAAGAAAAATAAACTTCATTTATTGAATTTGATTCATTTTCATTAGAT
CAAAAGTTATGTCCAATTGAATAAAAATGTTACTTTCAGAAAGTGCTCGA
AAACGTTAAAAATCGACCTATCAAATTTTTACTTTAAATTTGGCAATCGC
AATAGCCTTTACATGATTAAGAGCATTTTTCTTAAACCAAACACATAAAT
TTTGAAACTGAAGGGTCGAAAGGGCTCAAAATCTTCATCAAAATTAATTT
GATTTAGTTTTACCAAAATTTTCCTCAGATTTTTGGTTCTAGACTGGACT
AAGTCTATGTAAGGCTGAATCTACCTCGAAACCCATATTTGATGTATTTT
TATGAATTCTACCAGATCTTTTGGCCTTTTTCGACGAATTTTCTTCCTTT
CATTGAAATTCAACCTTCCTTTAAATAACAAAAGGTCATTTAAACAGTTA
ATTATCATTTTTAATGACTGAAACAAAAATACTGATACATCTTGTAATTA
TGCTTCTGAATAATTTGATAGGTCGATTTTTAACATTTTTGAGCACTTTC
CAAAAGTAACTTTTTTATTCAATTGAGGATAACTTTTGATCTAATGAATC
GAATTCGATAAATGACCCATCAAAATTTAAGTTTATTTTTCTTCTTTCCA
ATAAAATAGGAATGGTTCTTTTAAAATTTTTAGATTTCGAGAAAATTACT
TTTAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTATATCATTTGGTGTT
AAGATAATGTTAAGATAAACTTGAAATCAATGAGTTGTAATAAAAAAGGC
TTCACCATTCGTGACATTAAGTAACAATATGAATTTCATTGTTTTCTTTT
ATAGTGATCGTTTACAATCCCCGTATGGCAGAAGAAGGCCTTTGATGGTG
GCGGGCACTGTCCTATTGATGTAAATTGTTGTGCTTGTTATATTTTCCTC
AACATTAAATTGAAATTTCTTCACTATTGATTTATTTTTTAGTTTCTGCA
TGTGATTGGATGATAAACACCACCTCGTCCCTGTGTATCCCAGGCTTTAT
TTACGTTACTGATTGACGCCAGAGACGCCTAGCGTTATCAGTATCAAAAA
GCTAAAATACGCAGGGAACGAGGTTACGATAAACATTTTCAAAGTAGCAT
TGATTCCCTAGTCCAAAATGGGAATGGTTCTTTTATAATGAATCTGCTGA
CATGACTTACACGGAAAACAACGATGACATCAATATATTTTATATCATTT
TTTTTATTCAGACTCAGTTTGTTTGGGATGGCTTTCAGTGCACCAGAAAG
TATAAGGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029231XLOC_029231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045739-exon-scaffold_100-1575043694:605607..605644TCONS_00045739-exon-scaffold_100-1575043694:605607..605644Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1575043694:604526..604623TCONS_00045739-exon-scaffold_100-1575043694:604526..604623Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1575043694:604315..604395TCONS_00045739-exon-scaffold_100-1575043694:604315..604395Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1575043694:603982..604021TCONS_00045739-exon-scaffold_100-1575043694:603982..604021Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1575043694:602875..602940TCONS_00045739-exon-scaffold_100-1575043694:602875..602940Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1575043694:602484..602533TCONS_00045739-exon-scaffold_100-1575043694:602484..602533Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1510915933:605607..605644TCONS_00045739-exon-scaffold_100-1510915933:605607..605644Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1510915933:604526..604623TCONS_00045739-exon-scaffold_100-1510915933:604526..604623Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1510915933:604315..604395TCONS_00045739-exon-scaffold_100-1510915933:604315..604395Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1510915933:603982..604021TCONS_00045739-exon-scaffold_100-1510915933:603982..604021Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1510915933:602875..602940TCONS_00045739-exon-scaffold_100-1510915933:602875..602940Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1510915933:602484..602533TCONS_00045739-exon-scaffold_100-1510915933:602484..602533Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1491911889:605607..605644TCONS_00045739-exon-scaffold_100-1491911889:605607..605644Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1491911889:604526..604623TCONS_00045739-exon-scaffold_100-1491911889:604526..604623Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1491911889:604315..604395TCONS_00045739-exon-scaffold_100-1491911889:604315..604395Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1491911889:603982..604021TCONS_00045739-exon-scaffold_100-1491911889:603982..604021Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1491911889:602875..602940TCONS_00045739-exon-scaffold_100-1491911889:602875..602940Clytia hemisphaericaexon
TCONS_00045739-exon-scaffold_100-1491911889:602484..602533TCONS_00045739-exon-scaffold_100-1491911889:602484..602533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:602484..605644 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100687	0	0.244937	0	1.87944	1.60839	9.96758	1.46626	0	0.960659	0	0.760865	2.01888	3.2024	0.315869	0	0	0	2.26829e-05	0.716369	0	0	0	0	1.1292	1.08993	0	0.0700246	0	0.293106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top