TCONS_00045734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045734
Unique NameTCONS_00045734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045734 ID=TCONS_00045734|Name=TCONS_00045734|organism=Clytia hemisphaerica|type=transcript|length=462bp
CTACAACTATGCAGCTACGATGTCGTTCCAAGCTGATCCAAAGAAGCCGA
TTGGTGGGCACATTTTAGCGCATGCGTCAACGACTCGTATTTCGCTACGA
AAAGGCCGTGGTGAACTGAGAATTGCCAAAATTTATGACAGtcCTGACTT
GCCAGAAAATGAGGCTACATACGCTATCACAGAAGGAGGAATCGCTGACG
CCAAAGAATAAGAGTGCGCATGCGTAGAGGTAGCTGTCAAATAATATTCA
CACCTCAAGAGATTCTCAAGATGGAGTCTTTTCGGGCTCATAGAATGGTT
CTACAAAAgactcaaaaaatacaatatagTAAATATTAGTTGGAATTCGA
ATCGTAGAGGATCCTCATCGAcagagaaaattgaattttatgtAATTGTA
CGAAGagaatatatttatttattagattccttatttattcaaaaaaattt
ccaatcgTAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_100:514502..515817-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045734 ID=TCONS_00045734|Name=TCONS_00045734|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at scaffold_100:514502..515817- (Clytia hemisphaerica)
CTACAACTATGCAGCTACGATGTCGTAAGTTTAAATTATATTGATTTTTA
TGCTCTACAACTTTTTATGATCTAGAACTTTGACAAACATAATACACCAC
GTGTCACAAGCCCAAACAGGGCCCTGTCCGTTGGTGATAAAAACACCACT
CATTTCATCATCACATCTTCATTGAGCTTTCACCCCCTGTGGGAACAAGA
ATAAAAACTTTGAAAATAATCTTTGTATTTTTTTAAGATTTAAAAAATAC
AATTTAGAACTCACTGGGTTACTTAAAAAGGGGTGTAAAATTTACTCCTC
TACTCTTCCAGAACAACAGCCATTCAATGTTTTCTTTCTCCTGAATGAGG
GGCTTGGATCAATCATCCTTTTTCAATAAGACGTTACTACTTCAAATTTT
ATTCCAATTTTCGAAATACTATCATTAAGAAATTTGTTTATTACCAACCC
TGATATGTTACTGTCATTGAATTGTTTAGGTTCCAAGCTGATCCAAAGAA
GCCGATTGGTGGGCACATTTTAGCGCATGCGTCAACGACTCGTATTTCGC
TACGAAAAGGCCGTGGTGAACTGAGAATTGCCAAAATTTATGACAGGTGA
ATGAGTCAGATTACTAGCCTACATTCGAGTCCCCCCGCTAATTAATTTTT
CGAAAATTTTCCACCCAGAACATTCTTATTTCAACCCTCCCCCCTATATT
AGCCTCCTTTTCAAATATTTCCCACCCAGGACATTTTTAAACCAGCCCCC
CAACACCCTGCTTATTAAGTTTTCCACCCGCCCCGTTTATTAGGTGTATT
AACAGATATGTTCACATTGATCGAAATAATTTAAATGGGCCATAGAAATC
GTTTATTGGACTTCAACTTCGACAGAATAGTTGAAAAAACTGATGACTGA
TGAAATAATTCTCAAAGAGTGAAAATAACAACCTTTTTAATAAGCCCAGA
ATTTACCACCTGTTTACAATAAATTACTTTTTTTTGCTTTTTTAGTCCTG
ACTTGCCAGAAAATGAGGCTACATACGCTATCACAGAAGGAGGAATCGCT
GACGCCAAAGAATAAGAGTGCGCATGCGTAGAGGTAGCTGTCAAATAATA
TTCACACCTCAAGAGATTCTCAAGATGGAGTCTTTTCGGGCTCATAGAAT
GGTTCTACAAAAGACTCAAAAAATACAATATAGTAAATATTAGTTGGAAT
TCGAATCGTAGAGGATCCTCATCGACAGAGAAAATTGAATTTTATGTAAT
TGTACGAAGAGAATATATTTATTTATTAGATTCCTTATTTATTCAAAAAA
ATTTCCAATCGTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029227XLOC_029227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045734-exon-scaffold_100-1575043694:515794..515817TCONS_00045734-exon-scaffold_100-1575043694:515794..515817Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1575043694:515222..515338TCONS_00045734-exon-scaffold_100-1575043694:515222..515338Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1575043694:514502..514822TCONS_00045734-exon-scaffold_100-1575043694:514502..514822Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1510915933:515794..515817TCONS_00045734-exon-scaffold_100-1510915933:515794..515817Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1510915933:515222..515338TCONS_00045734-exon-scaffold_100-1510915933:515222..515338Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1510915933:514502..514822TCONS_00045734-exon-scaffold_100-1510915933:514502..514822Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1491911889:515794..515817TCONS_00045734-exon-scaffold_100-1491911889:515794..515817Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1491911889:515222..515338TCONS_00045734-exon-scaffold_100-1491911889:515222..515338Clytia hemisphaericaexon
TCONS_00045734-exon-scaffold_100-1491911889:514502..514822TCONS_00045734-exon-scaffold_100-1491911889:514502..514822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:514502..515817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.7838	18.7701	3.76071	2.42364	0.61857	0	1.04886	0.245285	0.451135	2.04565	0	0.479049	0.59744	0.581117	0.0651149	0.274629	0.717697	0.883276	0	0	0.874017	0.900237	6.42939	3.36029	7.34211	20.4851	0.157239	0.615622	1.39127	1.63292
Blast
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BLAST of TCONS_00045734 vs. Swiss-Prot (Human)
Match: DMC1 (Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.772e-35
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 2 
Query:   14 ATMSFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDLPENEATYAITEGGIADAKE 208
            ATM+FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSP++PENEAT+AIT GGI DAKE
Sbjct:  276 ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE 340
The following BLAST results are available for this feature:
BLAST of TCONS_00045734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMC13.772e-3590.77Meiotic recombination protein DMC1/LIM15 homolog O... [more]
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