TCONS_00045733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045733
Unique NameTCONS_00045733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045733 ID=TCONS_00045733|Name=TCONS_00045733|organism=Clytia hemisphaerica|type=transcript|length=676bp
aaaaaatacaatttagAACTCACTGGGTTACTtaaaaaggggtgtaaaat
ttacTCCTCTACTCTTCCAGAACAACAGCcattcaatgttttctttctCC
TGAATGAGGGGCTTGGATCAATCATCCTTTTTCAATAAGACGTTACTACT
TCAAATTTTATTCCAATTTTCGAAATACTATCATTAAGAAATTTGTTTAT
TACCAACCCTGATATGTTACTGTCATTGAATTGTTTAGGTTCCAAGCTGA
TCCAAAGAAGCCGATTGGTGGGCACATTTTAGCGCATGCGTCAACGACTC
GTATTTCGCTACGAAAAGGCCGTGGTGAACTGAGAATTGCCAAAATTTAT
GACAGtcCTGACTTGCCAGAAAATGAGGCTACATACGCTATCACAGAAGG
AGGAATCGCTGACGCCAAAGAATAAGAGTGCGCATGCGTAGAGGTAGCTG
TCAAATAATATTCACACCTCAAGAGATTCTCAAGATGGAGTCTTTTCGGG
CTCATAGAATGGTTCTACAAAAgactcaaaaaatacaatatagTAAATAT
TAGTTGGAATTCGAATCGTAGAGGATCCTCATCGAcagagaaaattgaat
tttatgtAATTGTACGAAGagaatatatttatttattagattccttattt
attcaaaaaaatttccaatcgTAAGT
Run BLAST on NCBI

transcript from alignment at scaffold_100:514502..515576-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045733 ID=TCONS_00045733|Name=TCONS_00045733|organism=Clytia hemisphaerica|type=transcript|length=1075bp|location=Sequence derived from alignment at scaffold_100:514502..515576- (Clytia hemisphaerica)
AAAAAATACAATTTAGAACTCACTGGGTTACTTAAAAAGGGGTGTAAAAT
TTACTCCTCTACTCTTCCAGAACAACAGCCATTCAATGTTTTCTTTCTCC
TGAATGAGGGGCTTGGATCAATCATCCTTTTTCAATAAGACGTTACTACT
TCAAATTTTATTCCAATTTTCGAAATACTATCATTAAGAAATTTGTTTAT
TACCAACCCTGATATGTTACTGTCATTGAATTGTTTAGGTTCCAAGCTGA
TCCAAAGAAGCCGATTGGTGGGCACATTTTAGCGCATGCGTCAACGACTC
GTATTTCGCTACGAAAAGGCCGTGGTGAACTGAGAATTGCCAAAATTTAT
GACAGGTGAATGAGTCAGATTACTAGCCTACATTCGAGTCCCCCCGCTAA
TTAATTTTTCGAAAATTTTCCACCCAGAACATTCTTATTTCAACCCTCCC
CCCTATATTAGCCTCCTTTTCAAATATTTCCCACCCAGGACATTTTTAAA
CCAGCCCCCCAACACCCTGCTTATTAAGTTTTCCACCCGCCCCGTTTATT
AGGTGTATTAACAGATATGTTCACATTGATCGAAATAATTTAAATGGGCC
ATAGAAATCGTTTATTGGACTTCAACTTCGACAGAATAGTTGAAAAAACT
GATGACTGATGAAATAATTCTCAAAGAGTGAAAATAACAACCTTTTTAAT
AAGCCCAGAATTTACCACCTGTTTACAATAAATTACTTTTTTTTGCTTTT
TTAGTCCTGACTTGCCAGAAAATGAGGCTACATACGCTATCACAGAAGGA
GGAATCGCTGACGCCAAAGAATAAGAGTGCGCATGCGTAGAGGTAGCTGT
CAAATAATATTCACACCTCAAGAGATTCTCAAGATGGAGTCTTTTCGGGC
TCATAGAATGGTTCTACAAAAGACTCAAAAAATACAATATAGTAAATATT
AGTTGGAATTCGAATCGTAGAGGATCCTCATCGACAGAGAAAATTGAATT
TTATGTAATTGTACGAAGAGAATATATTTATTTATTAGATTCCTTATTTA
TTCAAAAAAATTTCCAATCGTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029227XLOC_029227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045733-exon-scaffold_100-1575043694:515222..515576TCONS_00045733-exon-scaffold_100-1575043694:515222..515576Clytia hemisphaericaexon
TCONS_00045733-exon-scaffold_100-1575043694:514502..514822TCONS_00045733-exon-scaffold_100-1575043694:514502..514822Clytia hemisphaericaexon
TCONS_00045733-exon-scaffold_100-1510915933:515222..515576TCONS_00045733-exon-scaffold_100-1510915933:515222..515576Clytia hemisphaericaexon
TCONS_00045733-exon-scaffold_100-1510915933:514502..514822TCONS_00045733-exon-scaffold_100-1510915933:514502..514822Clytia hemisphaericaexon
TCONS_00045733-exon-scaffold_100-1491911889:515222..515576TCONS_00045733-exon-scaffold_100-1491911889:515222..515576Clytia hemisphaericaexon
TCONS_00045733-exon-scaffold_100-1491911889:514502..514822TCONS_00045733-exon-scaffold_100-1491911889:514502..514822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:514502..515576 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.31913	7.98135	0.715141	1.12744	0.894275	0.890523	0.213141	0.598621	0.139703	0.319096	0.692705	0.195829	0.0805329	0	0.0941375	0.221567	0.124453	0.222927	0	0	0.334464	0.372142	1.65604	1.58476	59.8062	58.3484	0.227323	0	1.18563	1.17717
Blast
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BLAST of TCONS_00045733 vs. Swiss-Prot (Human)
Match: DMC1 (Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.258e-31
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:  240 FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDLPENEATYAITEGGIADAKE 422
            FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSP++PENEAT+AIT GGI DAKE
Sbjct:  280 FQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE 340
The following BLAST results are available for this feature:
BLAST of TCONS_00045733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMC11.258e-3191.80Meiotic recombination protein DMC1/LIM15 homolog O... [more]
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