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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045707 ID=TCONS_00045707|Name=TCONS_00045707|organism=Clytia hemisphaerica|type=transcript|length=919bp
TTAGAATTACGAAAAAGCACCCAATGAGTTTGCAGTGCAAAACTCAAACT
TCCCTTTGCAGtttTACAGTTCAGTAGAACCTCACGCCAAATACAGGAAC
GTCTTCCGTAAAGTTACCACTACCGCCATGAATATGGGTGGCTCAGATGA
ATCAGAAAGATCTTTAGTGAAAACAGCAATGTCCGTCAGCTTAGTAGCCG
CACTGGCTGCAGGAATCGGATTTCTAGCCTTCAAATACTATCGCAAAGGT
AGCAGTGGTAGTTGAGACAAGCTAAAAGTTGAATAAtccttttaaaaatc
aaaatagtgTGCTGACGATGTTTATAAAACAACCTTCAAGATCGTCGTCG
TTGTCGTAAGAAATACGAACGAATCAGAGATGAGAGAAACAATGCAGATT
TGAGATACGAATGTTGGAATGCAGAAATCATTCTCCGTTTTCTAACTTTG
TTTTCTGACCTCCGTATACTCTGAAAATTGTGGACGAGTAAAAGTTGACT
TTTCAAGTGTTCCATCTGAAAGTTTTCTTCACTTAATATTCATTGTTTTT
CGAAAAGAATTGCTTTTTGTCCTTTCTTTATGCAATCTTACTATGAATAA
AACTCGTCTGTTTTTTTAAACCCACTTAGATGATAAATTCATCGAAGTTT
TACAGAATTTCGAGATTTCACCTTCTCAGTAAAGGTGGATTTTTCAGTGC
GGCTAGATTTTCCCATCTAAAACCTATTGACTGCTTTTCCTTTGCTCGTT
TTATTCAATTCTTCTTGTATATTTGTTTTAACTCAAGATATCGTAGAGAA
GGACacaattcttttcaatattttatatattaggATATTTTCTGAATATT
TTAACAACAACAATGAAAATCATTATTAAAAAAACTAGATAGGCTAGAGA
GAGAattgttatatttttc Run BLAST on NCBI transcript from alignment at scaffold_100:816808..819620+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045707 ID=TCONS_00045707|Name=TCONS_00045707|organism=Clytia hemisphaerica|type=transcript|length=2813bp|location=Sequence derived from alignment at scaffold_100:816808..819620+ (Clytia hemisphaerica)
TTAGAATTACGAAAAAGCACCCAATGAGTTTGCAGTGCAAAACTCAAACT
TCCCTTTGCAGGTATAAAGCCTGTCTGTTTGTATTGCCGTATGTTTAATC
CTTTTTTGTGCTAAACctaatttgatatatttttgcaaattgaGTTAGGC
TTTTTTATAACTATTCGAAAAACATGGTTCATTAACAATTGCCCTTTTTA
GTCCTATGTCTACTTGTAGGTATATGAAACACCCCATATTCATGACGTCA
TATTTAATACGGAAGAATCAAAAAAAGACCGGGTGTTTCCCCTTAAtttt
taattgaaacaataaaactagTAACAAACGCTCGGACTAATTTGGATGCT
TCCGTATAGAACATTATGTCATGATATCAAAAACAACCTATTTTTCCTat
atgttttcttctttttagtttTACAGTTCAGTAGAACCTCACGCCAAATA
CAGGAACGTCTTCCGTAAAGTTACCACTACCGCCATGAATATGTAAGCAA
TCAAGTATTTAGATGTTTTGTTGACGAATTTTTCGCTGACTTGAAATCCA
AATGCAACATTTCAGAGTTACCTCGTTTACCTATAGTTGACTTTTACAAA
TTCGAACCCGAACTAGGAGTCTGAttcgttcgaattacagaatgattcga
ataatggaagttcgaataagcgagagtctatTTTAGTCTCTTTTTGTATG
CGATTCATAAAACNGACGAATTTTTCACTGACTTGAAATCCAAATGCAAC
ATTTCAGAGTTACCTCGTTTACCTATAGTTGACTTTTACAAATTCGAACC
CGAACTAGGAGTCTGAttcgttcgaattacagaatgattcgaataatgga
agttcgaataagcgagagtctatTTTAGTCTCTTTTTGTATGCGATTCAT
AAAACCGCAAGGATAACAAATGCAGCTACTGTATATGCCTCCGGGATGGA
TAAACCCTTGATTTTTGCCGCTCAAAACTATGCTAGGGATAGGCAAAATT
TTAGTGTCTTTCTGAATTGGAACCCTTGTTTAGCCTGATTTCCCAATGGG
GGATAGCATGTTTGTTAGCAGATGTTTCTTTCATGTAGAAGGTCACATTG
AGTTTGTGATAATGGGGATGTCTTTAACAGATATCATTCAGGGCACACGC
AACCACGCCACCACGCCCcctcactttttttcaaataaaatactATTTTT
AAGATATCCTGGTTCATACTTTCAATAGCTGCGTTTCTGGGCAAAGTCAG
TCTGAAATTAGTGTCATTTCAAGGCATATTACAGGATCACAGTCATAACT
TTCTCCCATCGGCGCAAACCGGTTGGCCCcccttagtcactatgtttttG
GCCCCTCCGCTTTCCAGATTTATGGTTTGGGCATAGTATAGGAAGTATAG
GAtctcctacctaacctcggcacacttttcagcgaaagtacgccatctag
cccCTCGGACTTCATAAATCTATGGGTGTTTGGCCCTATCATTACCTTTG
AATCACCTAAAGTATATATAATAAATACTCATCGGAGACAATTCATATTG
GTATAACTGTTACTATATATTTCGTTTTATAGGGGTGGCTCAGATGAATC
AGAAAGATCTTTAGTGAAAACAGCAATGTCCGTCAGCTTAGTAGCCGCAC
TGGCTGCAGGAATCGGATTTCTAGCCTTCAAATACTATCGCAAAGGTATA
CTGTCTggaatttcttgaatttcttatAAAGTTCACAGAAAAGAAATCTT
AAATATAGCTTTGCTTTTGGCTCTCTTTTTCAGAAAACATGACATGGAAT
CGTTGTctttctttgatattttacaGGATAACAGAAACCATGTTCGGGAC
TCGATTAGCTTTGATTGAAACTGTTGTAAACTACTCTCCTTCCCGTGTTA
AGCTTTATAGGGCTCTAGTAACTTTTCGGTGTAAAAAAGGGGGTTAAATC
CTCTAATTTTATGGAATTAGAACCAGCTTAAGTTTAAATATAGATAGAGT
TGATATTTTAAGTTAATAGCCCAGTTATCTAGGACTTTAACACAGCCGAC
TCGATAATCTAAGAACTGAACGGAAGTTATATGGGGCGGAGTCACCTCTC
CGTAAACATTGTTTGACATgtataattttcttttcattacaGGTAGCAGT
GGTAGTTGAGACAAGCTAAAAGTTGAATAAtccttttaaaaatcaaaata
gtgTGCTGACGATGTTTATAAAACAACCTTCAAGATCGTCGTCGTTGTCG
TAAGAAATACGAACGAATCAGAGATGAGAGAAACAATGCAGATTTGAGAT
ACGAATGTTGGAATGCAGAAATCATTCTCCGTTTTCTAACTTTGTTTTCT
GACCTCCGTATACTCTGAAAATTGTGGACGAGTAAAAGTTGACTTTTCAA
GTGTTCCATCTGAAAGTTTTCTTCACTTAATATTCATTGTTTTTCGAAAA
GAATTGCTTTTTGTCCTTTCTTTATGCAATCTTACTATGAATAAAACTCG
TCTGTTTTTTTAAACCCACTTAGATGATAAATTCATCGAAGTTTTACAGA
ATTTCGAGATTTCACCTTCTCAGTAAAGGTGGATTTTTCAGTGCGGCTAG
ATTTTCCCATCTAAAACCTATTGACTGCTTTTCCTTTGCTCGTTTTATTC
AATTCTTCTTGTATATTTGTTTTAACTCAAGATATCGTAGAGAAGGACac
aattcttttcaatattttatatattaggATATTTTCTGAATATTTTAACA
ACAACAATGAAAATCATTATTAAAAAAACTAGATAGGCTAGAGAGAGAat
tgttatatttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045707-exon-scaffold_100-1491911889:816808..816868 | TCONS_00045707-exon-scaffold_100-1491911889:816808..816868 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1510915933:816808..816868 | TCONS_00045707-exon-scaffold_100-1510915933:816808..816868 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1575043694:816808..816868 | TCONS_00045707-exon-scaffold_100-1575043694:816808..816868 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1491911889:817226..817299 | TCONS_00045707-exon-scaffold_100-1491911889:817226..817299 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1510915933:817226..817299 | TCONS_00045707-exon-scaffold_100-1510915933:817226..817299 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1575043694:817226..817299 | TCONS_00045707-exon-scaffold_100-1575043694:817226..817299 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1491911889:818390..818502 | TCONS_00045707-exon-scaffold_100-1491911889:818390..818502 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1510915933:818390..818502 | TCONS_00045707-exon-scaffold_100-1510915933:818390..818502 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1575043694:818390..818502 | TCONS_00045707-exon-scaffold_100-1575043694:818390..818502 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1491911889:818950..819620 | TCONS_00045707-exon-scaffold_100-1491911889:818950..819620 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1510915933:818950..819620 | TCONS_00045707-exon-scaffold_100-1510915933:818950..819620 | Clytia hemisphaerica | exon |
| TCONS_00045707-exon-scaffold_100-1575043694:818950..819620 | TCONS_00045707-exon-scaffold_100-1575043694:818950..819620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:816808..819620 + |
Blast
The following BLAST results are available for this feature:
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