TCONS_00045701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045701
Unique NameTCONS_00045701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045701 ID=TCONS_00045701|Name=TCONS_00045701|organism=Clytia hemisphaerica|type=transcript|length=1061bp
CTTTAATGAATTCGTCTGTTAACTGATGAATTTTGTGGGTGGGGAATATA
AAATGATTAGTGAATGGTTCAAAGACATAGATACGGTTAAATGTTGCATT
CaaagataaattttcaaaaatatcattccAAATTTTGTTGCTAGGCACAC
GATCACCATTTTCCATTCCCCAAAAGTACAAATTAATCCGTTTTGATGTT
CGACATGTGACATTAGTATTTCGTGTGTACCTTTTTTGCCAGTCGTACTG
TGGATTGGACATAAGATCCATTAGTATTCGATGCAAGTGTGGGTCGAACG
GAGGTGACCCAATTCCAAGTGGTCGCCAATGATGCCATCGCCATACATCG
CCACTGGTATCATCTActaaaaggttttgttttggtaGCCAATTCCAAAA
TGTTTCTGGTAGCCTAGTCAAAAATACTTCATAGAACGAGTTTCTTAATT
TCCATACCACAACGTCGATTTGTTTTTTCTCGTACATGTTTTGAGCTTGC
TGGATCACTTTATGATCATAATGCGACCTAATTGGAGATACATTAAACAC
GAAAAAAAGAGTTTGNTATGATCATAATGCGACCTTATTGGAGATACATT
AAACACGAAAAAAAGAGTTTGCATATTATTATCGTTGTGATGACGTATAT
TTAACAAAAGCTCCAGCAAATCATCTTCGTCTGTTTTCGTAACTGCTTGG
AATTGGGTCTCGATAAATTGAGTGTAGTTCTCTTCGCTTAGTCGAATCAA
ACGATTTTGTACTGGTGAGAATGTCCAAACTATAAAACAAGGTTCATACA
GCATTGACTTGACCAAATACCTCAACTGCACAATAGAATCTTGCAATGCG
GAGCCTGGGGCATCTACATATGGAATAATACTGACATTCCTGACTTCAAA
GCATGTTGTAATCGTAAGTCGAAAAGCCATCGATACTGGCATACAAACGA
TAAAGCAAAGAAAACATATTGATACACCAGCCATTGGTATCGACCTATAC
ATTATCATTTGAATACTTTTTAAAGTTTCGAAAGAAAGCTCTTGTACAGC
CACAGCGTACT
Run BLAST on NCBI

transcript from alignment at scaffold_100:756816..757937+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045701 ID=TCONS_00045701|Name=TCONS_00045701|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_100:756816..757937+ (Clytia hemisphaerica)
CTTTAATGAATTCGTCTGTTAACTGATGAATTTTGTGGGTGGGGAATATA
AAATGATTAGTGAATGGTTCAAAGACATAGATACGGTTAAATGTTGCATT
CaaagataaattttcaaaaatatcattccAAATTTTGTTGCTAGGCACAC
GATCACCATTTTCCATTCCCCAAAAGTACAAATTAATCCGTTTTGATGTT
CGACATGTGACATTAGTATTTCGTGTGTACCTTTTTTGCCAGTCGTACTG
TGGATTGGACATAAGATCCATTAGTATTCGATGCAAGTGTGGGTCGAACG
GAGGTGACCCAGTGATAACATCTACTACAAGGTTTTGTTTTGGTAGCCNG
TGGGTCGAACGGAGGTGACCCAATTCCAAGTGGTCGCCAATGATGCCATC
GCCATACATCGCCACTGGTATCATCTActaaaaggttttgttttggtaGC
CAATTCCAAAATGTTTCTGGTAGCCTAGTCAAAAATACTTCATAGAACGA
GTTTCTTAATTTCCATACCACAACGTCGATTTGTTTTTTCTCGTACATGT
TTTGAGCTTGCTGGATCACTTTATGATCATAATGCGACCTAATTGGAGAT
ACATTAAACACGAAAAAAAGAGTTTGNTATGATCATAATGCGACCTTATT
GGAGATACATTAAACACGAAAAAAAGAGTTTGCATATTATTATCGTTGTG
ATGACGTATATTTAACAAAAGCTCCAGCAAATCATCTTCGTCTGTTTTCG
TAACTGCTTGGAATTGGGTCTCGATAAATTGAGTGTAGTTCTCTTCGCTT
AGTCGAATCAAACGATTTTGTACTGGTGAGAATGTCCAAACTATAAAACA
AGGTTCATACAGCATTGACTTGACCAAATACCTCAACTGCACAATAGAAT
CTTGCAATGCGGAGCCTGGGGCATCTACATATGGAATAATACTGACATTC
CTGACTTCAAAGCATGTTGTAATCGTAAGTCGAAAAGCCATCGATACTGG
CATACAAACGATAAAGCAAAGAAAACATATTGATACACCAGCCATTGGTA
TCGACCTATACATTATCATTTGAATACTTTTTAAAGTTTCGAAAGAAAGC
TCTTGTACAGCCACAGCGTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029209XLOC_029209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045701-exon-scaffold_100-1491911889:756816..757118TCONS_00045701-exon-scaffold_100-1491911889:756816..757118Clytia hemisphaericaexon
TCONS_00045701-exon-scaffold_100-1510915933:756816..757118TCONS_00045701-exon-scaffold_100-1510915933:756816..757118Clytia hemisphaericaexon
TCONS_00045701-exon-scaffold_100-1575043694:756816..757118TCONS_00045701-exon-scaffold_100-1575043694:756816..757118Clytia hemisphaericaexon
TCONS_00045701-exon-scaffold_100-1491911889:757180..757937TCONS_00045701-exon-scaffold_100-1491911889:757180..757937Clytia hemisphaericaexon
TCONS_00045701-exon-scaffold_100-1510915933:757180..757937TCONS_00045701-exon-scaffold_100-1510915933:757180..757937Clytia hemisphaericaexon
TCONS_00045701-exon-scaffold_100-1575043694:757180..757937TCONS_00045701-exon-scaffold_100-1575043694:757180..757937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:756816..757937 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.061	0.451592	0.14301	0.424942	0.428246	0.326732	0.345337	0.355336	2.06025	3.37349	0	0.122695	0	0	0	0	0	0	0	0	0.494983	0.233917	0	0	0	0.1095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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