|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045700 ID=TCONS_00045700|Name=TCONS_00045700|organism=Clytia hemisphaerica|type=transcript|length=1060bp
TGTTCGAAGTTCGAAATATAGTATTTTACAAGGGTTTACGCTTAACGGGA
ACTTATAACAATTGGTTcgaattaatgaaaattcgaataagcgagaaATA
GTCTAGTTCATTTCACATAATATACGATTTACTTGCTGAATAACCAATTC
AAAAAACAGGGGATTAAAATAATCGTCCTCTTGTATCATGATATAGTTCA
TAGACGATCCTTTTCGAAGTTGAGGAGTGTTTTCAAGGGTAGTAAGGGTT
TCATATATATGGATTGTGTTTTCTTTGTTAAATTTCATTGGTGATGAAGG
TGGACCATTATAACTTTGACTTATAGTAATTGGTAAGTGGATAACAATGA
TGTCATCcttttgttcttcttctttcatTTCTTTAATGAATTTGTCTGTT
GACTGATGAGAACTTTTGTGGGTGGAgattataaaacgaataattgtATG
GTTCAAAGATACGGTTAAATGTTGCATTCaaagataaattttcaaaaaca
tcattCCAAATTTTGTTGCTAGGCACACGATTACTATCATTATCATCTGT
ATACCAAAAGTACAAATTAATCCGTTTTGACGTTCGACATGTTACATTAA
CATTACGTGTGTACCTTTTTTGCCAGTCGTACTGTGGATTGGACATAAGA
TCCATTAGTATTCGATGCAAGTGTGGGTCGAATGAAGGTGACCATCCCAT
TTCATCTACTACACGGTTTTGTTTTGGTAGCCAATTCCAAAATGTTTCAT
AGACCAAGTTTGTTAAACTCCATACCACAACGTCGATTTGTTTTTGCTCG
TACATGTTTTGAGCTTGCTGGATCATTCTAAAATAATTATAATACGACCT
CATTCCAAACATATGAACCACGAAAAAAAGAGTTTGCATATTATTATCGT
TGTGATGACGTATATTTAACAAAAGCTCCAGCAAATCATTTTCGTCTGTT
TGTGTAACTGCTTGGAATTGGGTCTCGATAAATTGAGTGTAGTTCTCTTC
GCTTAGTCGAATCAAACGATTTTGTACTGGTGAGAAAGCCCAAACTATGA
AACAGGGTTC Run BLAST on NCBI transcript from alignment at scaffold_100:735811..736870+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045700 ID=TCONS_00045700|Name=TCONS_00045700|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at scaffold_100:735811..736870+ (Clytia hemisphaerica)
TGTTCGAAGTTCGAAATATAGTATTTTACAAGGGTTTACGCTTAACGGGA
ACTTATAACAATTGGTTcgaattaatgaaaattcgaataagcgagaaATA
GTCTAGTTCATTTCACATAATATACGATTTACTTGCTGAATAACCAATTC
AAAAAACAGGGGATTAAAATAATCGTCCTCTTGTATCATGATATAGTTCA
TAGACGATCCTTTTCGAAGTTGAGGAGTGTTTTCAAGGGTAGTAAGGGTT
TCATATATATGGATTGTGTTTTCTTTGTTAAATTTCATTGGTGATGAAGG
TGGACCATTATAACTTTGACTTATAGTAATTGGTAAGTGGATAACAATGA
TGTCATCcttttgttcttcttctttcatTTCTTTAATGAATTTGTCTGTT
GACTGATGAGAACTTTTGTGGGTGGAgattataaaacgaataattgtATG
GTTCAAAGATACGGTTAAATGTTGCATTCaaagataaattttcaaaaaca
tcattCCAAATTTTGTTGCTAGGCACACGATTACTATCATTATCATCTGT
ATACCAAAAGTACAAATTAATCCGTTTTGACGTTCGACATGTTACATTAA
CATTACGTGTGTACCTTTTTTGCCAGTCGTACTGTGGATTGGACATAAGA
TCCATTAGTATTCGATGCAAGTGTGGGTCGAATGAAGGTGACCATCCCAT
TTCATCTACTACACGGTTTTGTTTTGGTAGCCAATTCCAAAATGTTTCAT
AGACCAAGTTTGTTAAACTCCATACCACAACGTCGATTTGTTTTTGCTCG
TACATGTTTTGAGCTTGCTGGATCATTCTAAAATAATTATAATACGACCT
CATTCCAAACATATGAACCACGAAAAAAAGAGTTTGCATATTATTATCGT
TGTGATGACGTATATTTAACAAAAGCTCCAGCAAATCATTTTCGTCTGTT
TGTGTAACTGCTTGGAATTGGGTCTCGATAAATTGAGTGTAGTTCTCTTC
GCTTAGTCGAATCAAACGATTTTGTACTGGTGAGAAAGCCCAAACTATGA
AACAGGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045700-exon-scaffold_100-1491911889:735811..736870 | TCONS_00045700-exon-scaffold_100-1491911889:735811..736870 | Clytia hemisphaerica | exon |
| TCONS_00045700-exon-scaffold_100-1510915933:735811..736870 | TCONS_00045700-exon-scaffold_100-1510915933:735811..736870 | Clytia hemisphaerica | exon |
| TCONS_00045700-exon-scaffold_100-1575043694:735811..736870 | TCONS_00045700-exon-scaffold_100-1575043694:735811..736870 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:735811..736870 + |
Blast
The following BLAST results are available for this feature:
|
