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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045695 ID=TCONS_00045695|Name=TCONS_00045695|organism=Clytia hemisphaerica|type=transcript|length=667bp
CTCAAGAGCAGAGTCACatgatcaaattttcaaaaaatgacttCTCTTAA
AGATTGTCTTCTGTTATTGGTGGTTGTGGTATCTCTCCTTTACCACCTCT
CCTCTGCACACACCATCAAAAAATACGGCAGTTTACGGAAATGTAATGGT
GTATGCTTAACACTGAATCGTGATTGTCTTCAAAAAGCACTGAAGACGAA
TTATTATAAGCTAGTATGCGATGCTATTAACAGATATTGCGTGAAGAATG
AAGGATGTCCAAAAGCTTCCAAGCTCCTGGGTGGCACGAAACTAAAAGGC
CATCACAGTCGACCAGTCCTCACTTGTACACAACAGTGTGACGTCGATAG
CAGATTTTGTGGCCAATTCAGTCGGAACGTCTTTCAATATGTTCGATGCA
ACATAAACAGATCAAAATGCCTTAAAAAGTGTTAAAATTAAAAGAGTGGT
AGAAATTTGTAATAAAACCATTTCTGATTAGCTTATTTCAaactgataca
taccttatcggccctttttacaccggcccttactggcgttatttttgggt
tcgtggcgtaataaggtgTGGCGGGACTTATAATGGAGCCAATAGGAGTT
TCGTGTTGATAACGAATGTttcaactaaaaattgaaagcaaaatttagtt
ataaaatttgaaaaaat Run BLAST on NCBI protein sequence of TCONS_00045695-protein >TCONS_00045695-protein ID=TCONS_00045695-protein|Name=TCONS_00045695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MTSLKDCLLLLVVVVSLLYHLSSAHTIKKYGSLRKCNGVCLTLNRDCLQK
ALKTNYYKLVCDAINRYCVKNEGCPKASKLLGGTKLKGHHSRPVLTCTQQ
CDVDSRFCGQFSRNVFQYVRCNINRSKCLKKC Run BLAST on NCBI transcript from alignment at scaffold_100:647817..650194+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045695 ID=TCONS_00045695|Name=TCONS_00045695|organism=Clytia hemisphaerica|type=transcript|length=2378bp|location=Sequence derived from alignment at scaffold_100:647817..650194+ (Clytia hemisphaerica)
CTCAAGAGCAGAGTCACatgatcaaattttcaaaaaatgacttCTCTTAA
AGGTAagaagtttcatttttaaatcaaGTACATTTTCTTAAACCCGtcga
gcatcttcctattttcTTTACGTGTAACAGCTTGAATGGGACTTTTTTAT
AGAGTGGTTacgtgattttgattttttttttcgtgattgcgtgatcagag
gtgaaaacgtgatcgtgattttaaggatttttgagccgtgatgcgtgatt
aTCCAAATCTCTGgctgattttcgtgatcgtgattgaaaacaaaaaactg
cgtgatatcgtgatcagacttACCGCTTGGGGGACCTCATCTATTTGGTT
TGTAAAGTTGGTTAATGGACATAAATGAAACTTAATCTGGTGATGCTATA
cccttttttttcttaaaaactgTTTGAAGTAAAGAGCCGTCTAAAAAGTG
TGGCGTATATAAACCCATGTTTAATTTATAATACCGGCCCGTGCATGTAC
GGTTCTGAATCTTGATAAGTAGTACTGTACGTGGCTAAGTAGTGTCGCTT
TTCTTTGGTCCCTTAAACTTATTTACCCCTGAGGGGCCTCCAGCGGTTTG
ggtgaatgggcttttccagaaaaaaattgaatatggggggtggaggataa
aacaattttcagtgatttaccccccggacaaagtgacttttagCCCCCCG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCCGGACAGCGGGTTTTACCctccggacaagc
atcagttgaccccccggacaacccaaattacccccggacaaggcaaattt
tgatgatttttcggacaatatatcctccccccccccatgcacggacattt
tctggaagagcccaatgcgtgaatgggcttttttagttgcgtgaatgtgt
gaaaaTTAAACAAAACTGTAACTGTAACTACATTACATCTGACGACATGT
AGAACAAGACTTTCGACAAAATAATAGCTTCCTAAGTAACATGTCAGAAA
GTTTTACTGCAGTGGCAATTTAATCAACATTTGTTTGAGTGTACTTTTTC
GGCAAATATTTCCTTCAAACTAAGAACTTTCGTAATAAAAATACATCATA
TACTATTATCCGAGATTCGTTGACCAAATTACTCCGTACATGCGTTTCTT
CTTCTTAGATTGTCTTCTGTTATTGGTGGTTGTGGTATCTCTCCTTTACC
ACCTCTCCTCTGCACACACCATCAAAAAATACGGCAGTTTACGGAAATGT
AATGGTGTATGCTTAACACTGAATCGTGATTGTCTTCAAAAAGCACTGAA
GACGAATTATTATAAGCTAGTATGCGATGCTATTAACAGGTCAGTGAATT
TTTCCATCACTTTAGTTTGATATTGTTAGATTTTCAGCAACAAGTAATAC
GATattaatgttaatgtatatattctttaaagtcgaaaaacgtgtacaaa
tctgtactagctttaaagctaatagagaTTGACCCATAAATATGCGGTGA
TGGGAATTAAGAAGTTTCCTACTTTAGACATAAATTCTACAAAGAAATCT
GAGTTTGGATGGTTGAATGATAAAGCGAAGGTTGATATGTTTCGCCACCT
CTCTTATTTCTTGTTAAGTCTATGTTATGATGAGTTATTGAGAGATCGGG
TTTTCTAAGTCCATGGGTGGCGCGAGGATACattgaatttttgaaagtaA
ACGAGGAAAATATTAAGAAATAGTCGATCGACCTTCCAAAAATTACTTTC
TCCAGATGAGGGATGGAATAAACACTTATATAATATATCCTAATCTATCC
ATTCAAATAAGATGGACCAAtcttttttgtcctttttgttATAGATATTG
CGTGAAGAATGAAGGATGTCCAAAAGCTTCCAAGCTCCTGGGTGGCACGA
AACTAAAAGGCCATCACAGTCGACCAGTCCTCACTTGTACACAACAGTGT
GACGTCGATAGCAGATTTTGTGGCCAATTCAGTCGGAACGTCTTTCAATA
TGTTCGATGCAACATAAACAGATCAAAATGCCTTAAAAAGTGTTAAAATT
AAAAGAGTGGTAGAAATTTGTAATAAAACCATTTCTGATTAGCTTATTTC
Aaactgatacataccttatcggccctttttacaccggcccttactggcgt
tatttttgggttcgtggcgtaataaggtgTGGCGGGACTTATAATGGAGC
CAATAGGAGTTTCGTGTTGATAACGAATGTttcaactaaaaattgaaagc
aaaatttagttataaaatttgaaaaaat Coding sequence (CDS) from alignment at scaffold_100:647817..650194+ >TCONS_00045695 ID=TCONS_00045695|Name=TCONS_00045695|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_100:647817..650194+ (Clytia hemisphaerica)
atgacttCTCTTAAAGATTGTCTTCTGTTATTGGTGGTTGTGGTATCTCT
CCTTTACCACCTCTCCTCTGCACACACCATCAAAAAATACGGCAGTTTAC
GGAAATGTAATGGTGTATGCTTAACACTGAATCGTGATTGTCTTCAAAAA
GCACTGAAGACGAATTATTATAAGCTAGTATGCGATGCTATTAACAGATA
TTGCGTGAAGAATGAAGGATGTCCAAAAGCTTCCAAGCTCCTGGGTGGCA
CGAAACTAAAAGGCCATCACAGTCGACCAGTCCTCACTTGTACACAACAG
TGTGACGTCGATAGCAGATTTTGTGGCCAATTCAGTCGGAACGTCTTTCA
ATATGTTCGATGCAACATAAACAGATCAAAATGCCTTAAAAAGTGTTAAa
tgacttCTCTTAAAGATTGTCTTCTGTTATTGGTGGTTGTGGTATCTCTC
CTTTACCACCTCTCCTCTGCACACACCATCAAAAAATACGGCAGTTTACG
GAAATGTAATGGTGTATGCTTAACACTGAATCGTGATTGTCTTCAAAAAG
CACTGAAGACGAATTATTATAAGCTAGTATGCGATGCTATTAACAGATAT
TGCGTGAAGAATGAAGGATGTCCAAAAGCTTCCAAGCTCCTGGGTGGCAC
GAAACTAAAAGGCCATCACAGTCGACCAGTCCTCACTTGTACACAACAGT
GTGACGTCGATAGCAGATTTTGTGGCCAATTCAGTCGGAACGTCTTTCAA
TATGTTCGATGCAACATAAACAGATCAAAATGCCTTAAAAAGTGTTAAat
gacttCTCTTAAAGATTGTCTTCTGTTATTGGTGGTTGTGGTATCTCTCC
TTTACCACCTCTCCTCTGCACACACCATCAAAAAATACGGCAGTTTACGG
AAATGTAATGGTGTATGCTTAACACTGAATCGTGATTGTCTTCAAAAAGC
ACTGAAGACGAATTATTATAAGCTAGTATGCGATGCTATTAACAGATATT
GCGTGAAGAATGAAGGATGTCCAAAAGCTTCCAAGCTCCTGGGTGGCACG
AAACTAAAAGGCCATCACAGTCGACCAGTCCTCACTTGTACACAACAGTG
TGACGTCGATAGCAGATTTTGTGGCCAATTCAGTCGGAACGTCTTTCAAT
ATGTTCGATGCAACATAAACAGATCAAAATGCCTTAAAAAGTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045695-exon-scaffold_100-1491911889:647817..647868 | TCONS_00045695-exon-scaffold_100-1491911889:647817..647868 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1510915933:647817..647868 | TCONS_00045695-exon-scaffold_100-1510915933:647817..647868 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1575043694:647817..647868 | TCONS_00045695-exon-scaffold_100-1575043694:647817..647868 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1491911889:649075..649255 | TCONS_00045695-exon-scaffold_100-1491911889:649075..649255 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1510915933:649075..649255 | TCONS_00045695-exon-scaffold_100-1510915933:649075..649255 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1575043694:649075..649255 | TCONS_00045695-exon-scaffold_100-1575043694:649075..649255 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1491911889:649761..650194 | TCONS_00045695-exon-scaffold_100-1491911889:649761..650194 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1510915933:649761..650194 | TCONS_00045695-exon-scaffold_100-1510915933:649761..650194 | Clytia hemisphaerica | exon |
| TCONS_00045695-exon-scaffold_100-1575043694:649761..650194 | TCONS_00045695-exon-scaffold_100-1575043694:649761..650194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:647817..650194 + |
Blast
The following BLAST results are available for this feature:
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