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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045692 ID=TCONS_00045692|Name=TCONS_00045692|organism=Clytia hemisphaerica|type=transcript|length=6842bpRun BLAST on NCBI protein sequence of myosin II heavy chain, striated-type >TCONS_00045692-protein ID=TCONS_00045692-protein|Name=myosin II heavy chain, striated-type|organism=Clytia hemisphaerica|type=polypeptide|length=1954bp MAAFENAMDKDPMLYLQVDKSQAMKEQAKSFDAKKWVWVPVKEGNKGYVARun BLAST on NCBI transcript from alignment at scaffold_100:618640..687529+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045692 ID=TCONS_00045692|Name=TCONS_00045692|organism=Clytia hemisphaerica|type=transcript|length=68890bp|location=Sequence derived from alignment at scaffold_100:618640..687529+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:618640..687529+ >TCONS_00045692 ID=TCONS_00045692|Name=TCONS_00045692|organism=Clytia hemisphaerica|type=CDS|length=146625bp|location=Sequence derived from alignment at scaffold_100:618640..687529+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045692 vs. Swiss-Prot (Human)
Match: MYH7 (Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5) HSP 1 Score: 1407.51 bits (3642), Expect = 0.000e+0 Identity = 882/1888 (46.72%), Postives = 1266/1888 (67.06%), Query Frame = 2
Query: 518 NNKMAAFENAMDKDPMLYLQVDKSQAMKEQAKSFDAKKWVWVPVKEGNKGYVAAQVKSASGDKVTVETQAGKSMELLKEKCDQMNPPKYEKCQDMASLTYLNEASVLHNLAARYEIGLIYTYSGLFCVAINPYRRLPIYTDTVVKMYRGKRPSEMPPHVFAIVDTAYQDMLIEHENQSMLITGESGAGKTENTKKVIQYIAKVAGV--EKKKEDAPDTGIRVKGGLDEQVVQANPLLEAFGNAKTTRNNNSSRFGKFIRCHFSQTGKLAGADIESYLLEKNRVIHQGNAERNYHVFYQLLYATTDEELQKLCLLTREAHNYYFLSKGVAHVDRIDDHAEYQDLCNAIAVLGFSDEERWSMFKVVASIMNMGNMKFKQKPRDEQAEVVDPADGERVSYLLGIAVGEFHKSLVKPKVKVGTEFVNKGQNVNQVLYTVAGLSKALFERMFWWIVQRVNKALDTKERRSYFIGVLDIAGFEIFDYNSFEQLCINLTNEKLQQFFNHHMFVLEQEEYKKEGINWEFIDFGMDLEQTIDLIEKPMGVFAMLEEECIVPKATDQTYLQKLHKQHAGNNSSYTKPTPKQAKAGGGDFILHHYAGSVGYSVPGWLEKNKDPINEHSAQLFSKATDPLVSHLFQDYN------PDVTGGRRKGSAFQTVSYRHKEQLKNLLGTLMSTSPHFVRCIIPNENKAPGEVDGQLILHQLRCNGVLEGIRICRKGFPSRMLFADFRQRYQILAASAIPSG-FVDGKVAAEKLIEALQLDQSEYRVGHTKVFFRAGIVGELEDMRDERLSKIISQFQAFCKGHLMRIEYKKMCDQRIGLAVIQRNVRKFLFLRNWTWWKLYIKVQPLLSIXXXXXXXXXXXXXXXXXXXXXXNDEEKRKKMETQLTETIADKEKMYAELQAETDRLIAAEDKLMQTQNIKDKXXXXXXXXXXXXXXXXXXXXXXXGKVAEAESKIDDLNNKCEDMQTNIQRLEQEKTSRDKQIDALNEDISRQEEGIAXXXXXXXXXXXXXXXRTEQLQAAEDKCSSLNKAKNKVEGQLKDTEHSXXXXXXXXXXXXXXXXXXXXXXXDTRDKLAETEGSLKEAKDTVVKRDKAIKELEEIKEGNENQIKQLQKRIQXXXXXXXXXXXXXXXXXXXXQKVELARKDLESQIEEMNEQLENASGATNTQVEVNKKREQENQRLRKEMDEQXXXXXXXXXXTKQKFNAAFAEAQEELDNVKKAKSKADKERANLAAELDDVHGQLETAKKQKQGADKSNRALDEQLKDLHSKINELETNLSDSEAKCSKAAAENASLNIQLEETEHKLGLSTKNLKTMETNFNDAKNSADSESKGKHDNHQKLQNALGXXXXXXXXXXXXXAARSELQAKLSRANADAAQWKNKYDMEGASRVEELEDAKRKLANRVQXXXXXXXXXXXXXXXXXXVKNRMNXXXXXXXXXXXKAQAQASNLEKKQKKFDQQINEWKIKCDEIQADLDKSQRDARGYSTELLKVRTAHEDTEEKYEALKKENRALTAELTSITDQLSDGGKSSAEVEKIRRKLGMXXXXXXXXXXXXXXXXXXXXGKYLKVQLELTQIKQTSDRRSAEKDEEIETMRKNHQRQMDSLQNTIDAEQRAKGELLKNKKKYDSDVADLESQLDGALRTNGDYXXXXXXXXXXXXEMQALIDDESRGRDDMRDSASRSERRANDLAVQLDEARVALEQADRARKLADNEKNEFADRAAELQSMYNNIANAKRKAEGDYHXXXXXXXXXXXXXXXXXXXXXXXXXXVARLMAELNSAQDAASTADKSRAMLSKQCVDLQSRLEEAEAAGGKGLKNQIRKLEARIMEIENDLDTEVRKSTDVIKAARKSEKKVKELQFAVDDEKKTAERAQDTAEKLNQKLK 6154
+++MA F A YL+ + + ++ Q + FD KK V+VP + + +V A++ S G KVT ET+ GK++ + +++ Q NPPK++K +DMA LT+L+E +VL+NL RY +IYTYSGLFCV +NPY+ LP+YT VV YRGK+ SE PPH+F+I D AYQ ML + ENQS+LITGESGAGKT NTK+VIQY A +A + KK+ +P KG L++Q++QANP LEAFGNAKT RN+NSSRFGKFIR HF TGKLA ADIE+YLLEK+RVI Q AER+YH+FYQ+L + EL + L+T ++Y F+S+G V IDD E NA VLGF+ EE+ SM+K+ +IM+ GNMKFK K R+EQAE + ++ +YL+G+ + K L P+VKVG E+V KGQNV QV+Y L+KA++ERMF W+V R+N L+TK+ R YFIGVLDIAGFEIFD+NSFEQLCIN TNEKLQQFFNHHMFVLEQEEYKKEGI W FIDFGMDL+ IDLIEKPMG+ ++LEEEC+ PKATD T+ KL H G ++++ KP + K F L HYAG V Y++ GWL+KNKDP+NE L+ K++ L+S LF +Y G +KGS+FQTVS H+E L L+ L ST PHFVRCIIPNE K+PG +D L++HQLRCNGVLEGIRICRKGFP+R+L+ DFRQRY+IL +AIP G F+D + AEKL+ +L +D ++Y+ GHTKVFF+AG++G LE+MRDERLS+II++ QA +G L R+EYKK+ ++R L VIQ N+R F+ ++NW W KLY K++PLL A E EM +EE + +E + E +RK++E ++ + +K + ++QAE D L AE++ Q K +LE+ + E E+LE EE + L K + E + +L +D++ + ++E+EK + + ++ L E+++ +E IAKL KEKK L E+ ++ + LQA EDK ++L KAK K+E Q+ D E SL++EK + +E+ KRK+E +LK T++ + + E ++ + + K+D + L E + QLQK+++EL ARIEELE+ELE ER R KVE R DL ++EE++E+LE A GAT+ Q+E+NKKRE E Q++R++++E +A AA ++K + AE E++DN+++ K K +KE++ ELDDV +E K K +K R L++Q+ + SK E + +++D ++ +K EN L+ QL+E E + T+ T D K + E K K+ LQ+A + + L EQ EEE A++ELQ LS+AN++ AQW+ KY+ + R EELE+AK+KLA R+QE EEA+ A +K SS+EK K+R+ E+EDL++D+E++ A A+ L+KKQ+ FD+ + EWK K +E Q++L+ SQ++AR STEL K++ A+E++ E E K+EN+ L E++ +T+QL GK+ E+EK+R++L E ELQ ALEEAE +LE EEGK L+ QLE QIK +R+ AEKDEE+E ++NH R +DSLQ ++DAE R++ E L+ KKK + D+ ++E QL A R + QK +K LQ+ LK+ Q +DD R DD++++ + ERR N L +L+E R +EQ +R+RKLA+ E E ++R L S ++ N K+K + D LQ E+EE E + EEKA +A+ + A + EL QD ++ ++ + + + DLQ RL+EAE KG K Q++KLEAR+ E+EN+L+ E +++ + +K RKSE+++KEL + ++++K R QD +KL K+K
Sbjct: 3 DSEMAVFGAAAP-----YLRKSEKERLEAQTRPFDLKKDVFVP--DDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPG-----KGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQIL-SNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKP-EAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLSRIITRIQAQSRGVLARMEYKKLLERRDSLLVIQWNIRAFMGVKNWPWMKLYFKIKPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEALISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVK 1876 The following BLAST results are available for this feature:
BLAST of TCONS_00045692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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