TCONS_00045672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045672
Unique NameTCONS_00045672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045672 ID=TCONS_00045672|Name=TCONS_00045672|organism=Clytia hemisphaerica|type=transcript|length=1240bp
AGATACTGTAACGAGACAAATCCAATTCATTTCGAGTCAACCgagttttt
ggaaagttttcggGGAATAAAAGAGgtAAACTAATTCATTTGTCCGTTTG
ACAATTTGACAAACTATAATCTTCAAAGATAAAAAATCACACAAAGCACT
CTGTCCTCGACAAAAATAATGGCAGCTTCTCGTGATCATGACAACAACAA
CATGAACGGTTACTCCTCATCATCTAGCGAAGAAGACGAAAACattggat
ttcattttgaacTTGTTGAAAATGATTTGCAATGTATCATTTGCCACTAT
GTGATCAGAGGACTTACGGAGCTGCCATGTGGTCATGCAGGGTGCAAATT
CTGCATTGAAGAGTGGGAAAAACGAAAAGTGGCTTGCTGCGAATGTCAAA
CGGCATATGACAAGACAAAGAAACATGAAAGTCCGTACATTGACCGAAAA
ATCAAGCACGAAAGACTAGCTCACTGCAAGCAACACGAGAAAGGCTGCAC
CTGGCAAGGCTCCATTGATGATTACAAGCAGCAGCACCGCAAAAAGTGTG
CATTCAGAAACGTCAGATGTCGTCTATGTAATCAAAAAGTCGCCCGTCAT
GAAAAGGAAGGACACAAGTTGACGTGTACACATCGTTTGGTTAATTGCAC
AACATGTGGCGCCCAGTACAGGTTCATCAACAAAAAGAAACACGAAGATG
AAGAGTGCAAGGTGCCATGCGATTATTGGCAATATGGTTGCCATGAAATG
aTTCACAAACGGCACATGGAGCGTCACCTCGCCAATTCAGCAAGACGTCA
TATCGAACTTGTTAAAGCTCATTATGACAGAATTGTTGCCGAAAATAATT
GGTCATTGGCAGAGAAGGACAAAGAGATTGGAGTACTGAAAACGAGGGTT
TTGTCACAAAGCGAACGCATTATGGAGCTTGAAGGGAAGGAAATACCAAT
GGACATCCCCATGTGTTATAAagacGAATCTTTGGCCGGAAAGGATTGGT
TATTGGCAGAGAAGGACAAAGAGATTGGAATACTGAAAACGAGGGTTTTG
TCACAAAGCGAACGCATTACGGAGCTTGAAGGGAAGGAAATACCAATGGA
Cacacaatcagggacaaaatgcttggcaaaaaagggaaattcaccggggt
gttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcgaaggg
tagagttttaactctgagttttaacgctagacttaagact
Run BLAST on NCBI

transcript from alignment at scaffold_100:300089..305516+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045672 ID=TCONS_00045672|Name=TCONS_00045672|organism=Clytia hemisphaerica|type=transcript|length=5428bp|location=Sequence derived from alignment at scaffold_100:300089..305516+ (Clytia hemisphaerica)
AGATACTGTAACGAGACAAATCCAATTCATTTCGAGTCAACCgagttttt
ggaaagttttcggGGAATAAAAGAGGTAAGTAATCTCCACAATTGGATAT
TTTTATACAAGAATTGAGTGTATGAGAATTAAgtataagaacataaattt
AAGgatattttaaggttttgcggattaagaatattcattatgaaatggat
ttacacaattcttataaaaaaaagcgtgtatttaaaaCAACAAGTTTTTG
GAGTTTTAGTCCCGTACAGGGTGACTTATGTGGCAAATTTAGGGTACACT
TTTTTGGCTCTCTTGGTTTGTATCTGACCCAAGTTAAAAGTGCTGTAATT
TTATTGGGTAGAAAATTTAGAGTCATTTACTAAATGTTTAAATAGAAATA
TTTCAGGCATTACTGGACATTTATGAAAGAACGAATCCGTGTTTGAAATG
AACTAATTGATCATATAAAACTGCTTAAAATTCACAAAGATTATGAAGAT
GTTCTAATCAAAAACAATATTGCATAAGTACGGCAATTTTGGTACGCTTC
ATAAATTCCGACTTCAGCATGGGATCTGCTGCTTAAAATTCACAAAGAGT
ATGAAAAAGGCTacgctacgtcatatcttctttCATTTCGAACTCCTACT
CAAGATTACGGCCtcaaagcctggagctgtctattgtgaaGACTACAAAA
AGGCCGGTAGTCATTTGTTCTCATTAAAAATATTGTACAATACAATATTG
CTAAGTAAGGCAATTTTTTGCACTTCCTAAATTCTGACTTTAGCATGGGG
TCTTTAAGAGTAATCctctaaaaaaaaaaagctaatcgaTGCTCTATGCT
AAGTTCAACCATGAACATTCAAAGTAGGTTCAGTTTAGAACGAAATTAAG
ACTAATCGAAATACATAGACAAGACATTCCATTTTGTGAATGTGTTTCAT
TTAGTGTATCTGCACACAAAAGGTACGGCAATTTTTTTAGGCTTCCTAAA
TTCCAACTTCAGCATGAAGTCTTTAAGAGTAATCctcttaaaaaataaaa
gctgATCGATGCTCTATGCCAAGTTCAACCTTAATTGTCAGCATTCAAAT
TAGGTTCAGTTTAGGATGGCAGTCATTTGttctcatttaaaaacaatatt
GCATAAGTACGGTCATTCTTTTCACTTCCTAAATTCCGACTTCAGCATGG
AGTCTTTAAGAGTAATCctcttaaaaataataaaagctGATTGATGCTCT
ATGCTAAGTTCAACCTTAATTGTCAACATTCAAATTAGGTTCAGTTTAGA
ACGAAATTAAGACTAATCATTTCATTATGTGAAGGCATTTAATGAACTGC
AAACAAAATGCATTTTATTGAATCATTTAAATCGACTCTATCAAgggaat
attttttcaaagcaattttGAAGTCAACACCATAAAAAGATTTGGATCTA
TTTTAAAAAAACCAttgttgtaaattttttttcttaactttttcgtACAA
TTTACTCCATTGAGTTTACTGGCACTCCCTCTATCTTGTCATGAACTCAA
AGGCGGAACTCAAGTCTCCTTGGGAAGGCGTAGATAGAAGTATCGTTGTC
AAAGATGACATCAACGAGAGGAGTACAAAAATTTACATTGACAGTAAAtt
ccttcaatttttatttttccaggtAAACTAATTCATTTGTCCGTTTGACA
ATTTGACAAACTATAATCTTCAAAGATAAAAAATCACACAAAGCACTCTG
TCCTCGACAAAAATAATGGCAGCTTCTCGTGATCATGACAACAACAACAT
GAACGGTTACTCCTCATCATCTAGCGAAGAAGACGAAAACattggatttc
attttgaacTTGTTGAAAATGATTTGCAATGTATCATTTGCCACTATGTG
ATCAGAGGACTTACGGAGCTGCCATGTGGTCATGCAGGGTGCAAATTCTG
CATTGAAGAGTGGGAAAAACGAAAAGTGTAAGTATGTTTTTTTCTACCTA
AAGAAGAATAGTATCGACAAAGgggtagttttttttttgatatctTATTT
GATAGTGAAAACATGaaggctttttttgtaaaaatgaaagaacaTTGAAA
CCAggaaatcaacaaaataaataagaacagccgagcctgaTTTATTTATT
GTCGTACCTCCGACACCCTCTAACGAAATATTTAGTTGACTTggagtttt
ataagaacaaataatCCATCCGTTTTCAGGGCTTGCTGCGAATGTCAAAC
GGCATATGACAAGACAAAGGTAGATAATGAATTCTTATCTTTTTCAAGTT
CTATAATAAACCAATTCAAggaaatttcatcactttttaaaCTGGGTTTT
AAAGACCCTTTTCAAGAAAGTTTGCGAACAAGTGAATGATTTTCAAAACC
AACCCACTACAAAAGTCCCCATAAAATTTGCTGTTCTTCCCTATTAAAAA
GAGGGGTGCAATCTATGCAACGATTGAAGTAATGTTAAGAATGGTCAATC
AATTAATTTTCAGAAACATGAAAGTCCGTACATTGACCGAAAAATCAAGC
ACGAAAGACTAGCTCACTGCAAGCAACACGAGAAAGGCTGCACCTGGCAA
GGCTCCATTGATGATTACAAGCAGCAGGTCAGTTCATGTTTTTCGAGAAC
GCTTTAACTTAAATGATTTTGGTGTTtgagcataaaagttatgtttcagg
ttcctttacacttttaacaaagaacgAGAACGCTTTAACTTAAATATAAA
CTTTACAGAGTTTTCTTTACAGAGTTTTCGTCGTTACTCGTGACTCTTTT
AATTTACAAATGTAACTCTATTGGTAGGTAATTAATATACAAATGTAACT
CTATTGGCAGGTAATGATCATATAAGATAATTCGAAGTACGATtcttaat
tcatgatattcgtgacgtaatcttttccaCGAAAACACCCCGGTCTTTGC
AAGTAGTGGTAAATTTTGGAGAATTTTTCTCTAGTTTAAAGTTGCCACTA
CCTGCAAAACTTGGGTGTTTCCGtaaaaaaattacgtcatgaatatcatg
aatacgaCCTAAAACATTAAATTGGAGTAATTCATATAcgattttctttt
aaacaaactAGCACCGCAAAAAGTGTGCATTCAGAAACGTCAGATGTCGT
CTATGTAATCAAAAAGTCGCCCGTCATGAAAAGGAAGGACACAAGTTGAC
GTGTACACATCGTTTGGTTAATTGCACAACATGTGGCGCCCAGTACAGGT
TCATCAACAAAAAGGTATAACAAGTGCATTTTTGATAAGATCTCCAAAAA
CCCGAAAAAGGGACGGTTGAAGATGGTCCCGAGGTAAGGGGTTTGcagaa
aacaagaaaatgttTAGAAAGAGGGGTTGCTTTTACTACTCAGGATTCGT
AATTCCATAAGAGGGAAATTAGTCAATTTGAATTTAGTATCTGAGTTGAG
GGCGGTCAAAAAgctatttacaaattttaaaaacGAGAAACTTTAGGAGA
AAGCATGAAACGAAATTTAGCATTTAGCATCTGAAATGAGAGTTTCAATC
GAAATAAGAACCCTGTTATACATAGGTAGATACTAACTATATTTTATATG
GATAGTCCAGTAATCTAGGAATTTAAGACAGAATTTCGCTTGTTTTTACG
GGGCTCACGGCTAGCCGGTTCGGCTATCTATGAAAGGAACCGAACATTGG
AAGAAACATGGGTTCGAGCCGCTGATCTTTGCTTTTTGTAACGCTGAAGC
CAACCATTTGGATATCGCTCCTATACTAAGTACAAGATAACCTATGGGCG
ATAGACTATCAGAGGaattgaaatgattttatttaGGGTATTTTTTACTA
CAGAGATATgacaatgtaaaatattttcttttttcaccttAGAAACACGA
AGATGAAGAGTGCAAGGTGCCATGCGATTATTGGCAATATGGTTGCCATG
AAATGGTATACGACCTAGTGTCTGTATTGTCTAGCTAAATCAGCTTaaaa
aagaaactgaaaaaatgaAGCACTAGTGATGGAGCATAGTGAAAACCAAA
TTATTTCCAGGACGGGACCCTACCTTTTTAAggataatttcaaaatcact
AAGGGACAAATTCTTTAGAATTTCAGAGAGAATTTCACAtggtttcgttt
tttttctagaTTCACAAACGGCACATGGAGCGTCACCTCGCCAATTCAGC
AAGACGTCATATCGAACTTGTTAAAGCTCATTATGACAGAATTGTTGCCG
AAAATAATTGGTCATTGGCAGAGAAGGACAAAGAGATTGGAGTACTGAAA
ACGAGGGTTTTGTCACAAAGCGAACGCATTATGGAGCTTGAAGGGAAGGA
AATACCAATGGACATCCCCATGTGTTATAAGtatatttactttttcttga
tGCATACTACAAATACAGTGTTGTATCATTTCGTCACTTAAATTAACAGA
CTACATTTTAAAGATCGGAAACTTTTCCCACTTATTCTGGCTCTAGGATA
GACTTACAAATCATGAAAAACCTGTAGGTGTCATATGTTAACGTAGACTa
tagtctacttttggctgaactttgctttttgataatttattatgacgctg
agtccagtgaagtagactagaggcGTTTCACtaggtcgccattttgagag
aaaatgttaaaaatccaaataacaataaaactacttggagttgagagata
taatcaaaaatttgaaacaaacatcaataacagatttgcaatcccttatt
cccaaataaaaacattgcttcatactgtttttaccttccaaaaacaacta
aaatctggcggactgtttgcCTAGGCAAAAACATATTACCATATcatacc
gggccacttaattgGGCCATCCAGTCTAAATAAAAAGCTTCAAGTGGGCC
CCGGGCTAATGATAATGCAATAACTGTTAAAGGGATGATGGTAATTtgca
taactttttttttaaattcaattggCTAAAGGGCTATTTACAGTCCTATA
CACTACACAAAATATTGTTAGCAGGCAATATGTCGAGAATATATTGTTGA
GTGttgacaatatattgaaaatgtgtccgcaatatattgtcagctcgatt
tgcaatatttcaGCAATACAGGGGAATTTTGGAGTTGaaataattccttt
ttataatagagacGAATCTTTGGCCGGAAAGGATTGGTTATTGGCAGAGA
AGGACAAAGAGATTGGAATACTGAAAACGAGGGTTTTGTCACAAAGCGAA
CGCATTACGGAGCTTGAAGGGAAGGAAATACCAATGGACacacaatcagg
gacaaaatgcttggcaaaaaagggaaattcaccggggtgttttgaaacca
caatcgatttgtaagtgctctaaagtaggttcgaagggtagagttttaac
tctgagttttaacgctagacttaagact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029194XLOC_029194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045672-exon-scaffold_100-1491911889:300089..300163TCONS_00045672-exon-scaffold_100-1491911889:300089..300163Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:300089..300163TCONS_00045672-exon-scaffold_100-1510915933:300089..300163Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:300089..300163TCONS_00045672-exon-scaffold_100-1575043694:300089..300163Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:301761..302065TCONS_00045672-exon-scaffold_100-1491911889:301761..302065Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:301761..302065TCONS_00045672-exon-scaffold_100-1510915933:301761..302065Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:301761..302065TCONS_00045672-exon-scaffold_100-1575043694:301761..302065Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:302318..302357TCONS_00045672-exon-scaffold_100-1491911889:302318..302357Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:302318..302357TCONS_00045672-exon-scaffold_100-1510915933:302318..302357Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:302318..302357TCONS_00045672-exon-scaffold_100-1575043694:302318..302357Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:302602..302715TCONS_00045672-exon-scaffold_100-1491911889:302602..302715Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:302602..302715TCONS_00045672-exon-scaffold_100-1510915933:302602..302715Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:302602..302715TCONS_00045672-exon-scaffold_100-1575043694:302602..302715Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:303200..303352TCONS_00045672-exon-scaffold_100-1491911889:303200..303352Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:303200..303352TCONS_00045672-exon-scaffold_100-1510915933:303200..303352Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:303200..303352TCONS_00045672-exon-scaffold_100-1575043694:303200..303352Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:303981..304043TCONS_00045672-exon-scaffold_100-1491911889:303981..304043Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:303981..304043TCONS_00045672-exon-scaffold_100-1510915933:303981..304043Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:303981..304043TCONS_00045672-exon-scaffold_100-1575043694:303981..304043Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:304248..304468TCONS_00045672-exon-scaffold_100-1491911889:304248..304468Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:304248..304468TCONS_00045672-exon-scaffold_100-1510915933:304248..304468Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:304248..304468TCONS_00045672-exon-scaffold_100-1575043694:304248..304468Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1491911889:305248..305516TCONS_00045672-exon-scaffold_100-1491911889:305248..305516Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1510915933:305248..305516TCONS_00045672-exon-scaffold_100-1510915933:305248..305516Clytia hemisphaericaexon
TCONS_00045672-exon-scaffold_100-1575043694:305248..305516TCONS_00045672-exon-scaffold_100-1575043694:305248..305516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:300089..305516 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.117027	0.0527005	0	0	0	0	0	0.256729	0.0840336	0.0317631	0	4.53536	2.47626	0.0247172	0.176572	0.239189	0	4.11217	3.57296	0	0	0	0	0.831662	0	0	0	0.0491606	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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