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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045654 ID=TCONS_00045654|Name=TCONS_00045654|organism=Clytia hemisphaerica|type=transcript|length=1118bp
GTTGGATATAGATTTGTTACTTTTAGCCTTTGTATATATATTATGATTTA
ATGTTATTTATGTAATATGAAGATGTTATATGTACATAATATGCTTGTTA
CATgtattatatattttatattatgGTATTATGTTACCCTCTACAATGGA
GATCTCATGTTTGCATGTTGAAGAGTCTTGATCTCCATTGTCCCCAGTGC
ACTCCTCCTTTGTTTCCTTTCTGGAAGAATGGGCCTGAGTGAGCTCTCCT
CCTTGTCATGTGGTTTTATAAGAGCCTGCTCTCTCCAGCAAGGATGAGTT
GAAGCCTGACCATCGACAAGATAAGGTACTTTGATATTGATATATTAACA
TGAGGATCCTAGGTTATGTATTAGGATTTATTCAGGACAAATGTCTTACA
ATGTAAATATATTTCAGTCAAGTCATGTTAATACCTTTGGTCTCTCATCA
TATTAAAAGATCAAAACAGCCACCCAACAAATGCAATCTTTGTTTCAGCT
CAAAATCTTCACAGCAAAAAGACGATGCAATCACTATTCACAATAAACAA
ATGTTCAAAATACGGGTCATTGTCCACCTGATCCAGACTGTTTTGCATGT
CATTCAAGTGTTCCTTGGTTATCTGCTCATGTTGGCTTTCATGACGTACA
ATTCTTTAGTATGTGTGTCCATTCTCCTGGGGTATGGTTTCGGATATCTG
GTGTTCGCTTGGTATGATCTGACGATCGCCAATGGTGTAGCTGTGAAGAC
GAATGATAGCGATTGTTGTAATTTATAACAGGAAATACATTGGAAAAATC
ACAGATTTATTGAGCGAATTCTCTATTCTTTCATTAACTTGCAGTTTTAA
GCTAACCTTTTTCAATAGACTAGGgcggaaaaaatgaaattagttTGATG
AATCAGATATCAAATTCCCAAGGTAGTTTAAAtggtttttgaaagaaaga
aatagAGTAATTTTGTGATAAAAATCTGTTTGGCGATGCGGTCAAAGATA
AGCTTATGGTTTTATCAAGCAACGACTTTTGTTTCGACAGAAACTGTCAG
TAAGTCAAAGTCATGCGTCACTAGATCAAAGGGTTTTAAATGGATTTTTT
GGATTAATATTATCATCA Run BLAST on NCBI transcript from alignment at scaffold_100:199540..200980+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045654 ID=TCONS_00045654|Name=TCONS_00045654|organism=Clytia hemisphaerica|type=transcript|length=1441bp|location=Sequence derived from alignment at scaffold_100:199540..200980+ (Clytia hemisphaerica)
GTTGGATATAGATTTGTTACTTTTAGCCTTTGTATATATATTATGATTTA
ATGTTATTTATGTAATATGAAGATGTTATATGTACATAATATGCTTGTTA
CATgtattatatattttatattatgGTATTATGTTACCCTCTACAATGGA
GATCTCATGTTTGCATGTTGAAGAGTCTTGATCTCCATTGTCCCCAGTGC
ACTCCTCCTTTGTTTCCTTTCTGGAAGAATGGGCCTGAGTGAGCTCTCCT
CCTTGTCATGTGGTTTTATAAGAGCCTGCTCTCTCCAGCAAGGATGAGTT
GAAGCCTGACCATCGACAAGATAAGGTACTTTGATATTGATATATTAACA
TGAGGATCCTAGGTTATGTATTAGGATTTATTCAGGACAAATGTCTTACA
ATGTAAATATATTTCAGTCAAGTCATGTTAATACCTTTGGTCTCTCATCA
TATTAAAAGATCAAAACAGCCACCCAACAAATGCAATCTTTGTTTCAGCT
CAAAATCTTCACAGCAAAAAGACGATGCAATCACTATTCACAATAAACAA
ATGTAAGTTCACGTAAATTGAGTAATCATTATTAATCTAACAATATAATA
GGGGTTCTAAACCCAGCACTCTTTcccattttaaaattatttcttgctca
ACGCAACGTCAAAAATGGTGGCGTTTTAGTTTTGGATTTTACATATTAAG
TGACGTCAATAcagcaataaaaaaatttatagattttgacgtcaatttac
gTAAGCTTGGCCTTGTATTTAGCTCTATGTTAAATATGGCGAAGGAAAAT
GTCTTACATTGTTCATTGATCCTCAGGAAAGCACAGATTCGATTTCTGCA
GGTCAGTACTTGTTCTATATTGCAGGTTCAAAATACGGGTCATTGTCCAC
CTGATCCAGACTGTTTTGCATGTCATTCAAGTGTTCCTTGGTTATCTGCT
CATGTTGGCTTTCATGACGTACAATTCTTTAGTATGTGTGTCCATTCTCC
TGGGGTATGGTTTCGGATATCTGGTGTTCGCTTGGTATGATCTGACGATC
GCCAATGGTGTAGCTGTGAAGACGAATGATAGCGATTGTTGTAATTTATA
ACAGGAAATACATTGGAAAAATCACAGATTTATTGAGCGAATTCTCTATT
CTTTCATTAACTTGCAGTTTTAAGCTAACCTTTTTCAATAGACTAGGgcg
gaaaaaatgaaattagttTGATGAATCAGATATCAAATTCCCAAGGTAGT
TTAAAtggtttttgaaagaaagaaatagAGTAATTTTGTGATAAAAATCT
GTTTGGCGATGCGGTCAAAGATAAGCTTATGGTTTTATCAAGCAACGACT
TTTGTTTCGACAGAAACTGTCAGTAAGTCAAAGTCATGCGTCACTAGATC
AAAGGGTTTTAAATGGATTTTTTGGATTAATATTATCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045654-exon-scaffold_100-1491911889:199540..200091 | TCONS_00045654-exon-scaffold_100-1491911889:199540..200091 | Clytia hemisphaerica | exon |
| TCONS_00045654-exon-scaffold_100-1510915933:199540..200091 | TCONS_00045654-exon-scaffold_100-1510915933:199540..200091 | Clytia hemisphaerica | exon |
| TCONS_00045654-exon-scaffold_100-1575043694:199540..200091 | TCONS_00045654-exon-scaffold_100-1575043694:199540..200091 | Clytia hemisphaerica | exon |
| TCONS_00045654-exon-scaffold_100-1491911889:200415..200980 | TCONS_00045654-exon-scaffold_100-1491911889:200415..200980 | Clytia hemisphaerica | exon |
| TCONS_00045654-exon-scaffold_100-1510915933:200415..200980 | TCONS_00045654-exon-scaffold_100-1510915933:200415..200980 | Clytia hemisphaerica | exon |
| TCONS_00045654-exon-scaffold_100-1575043694:200415..200980 | TCONS_00045654-exon-scaffold_100-1575043694:200415..200980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:199540..200980 + |
Blast
The following BLAST results are available for this feature:
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