TCONS_00045632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045632
Unique NameTCONS_00045632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045632 ID=TCONS_00045632|Name=TCONS_00045632|organism=Clytia hemisphaerica|type=transcript|length=359bp
CCGCATAGAATCAACGCTGATACGGTAACGGCAACATACATCGGGAAAAC
AGTTGCGAACCGGTAAATCCGGTTTTCAATATGTCTTTTCAAGACGTAGT
CTTCATACATATGCAAAGGAACCACGATACAAACCAATATATCAGTGATC
GCTAATTGGATTTTAAATACATTGTGCGCTGTCATGTTCCGGCGTTTGTG
TATTCCGTAATATGTTATGACCAGTAGATTACCGGATACTCCGAGGCAGA
ACAGAATGGAGTAGACTGATAACATCAGATTGTTCATTAAAACATCTGCC
ATCTTTTTGCTGCTGTCTTTTAACAAAATTTGTTCTCCTGAATGAGATGa
agttgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00045632-protein

>TCONS_00045632-protein ID=TCONS_00045632-protein|Name=TCONS_00045632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
FSTSSHSGEQILLKDSSKKMADVLMNNLMLSVYSILFCLGVSGNLLVITY
YGIHKRRNMTAHNVFKIQLAITDILVCIVVPLHMYEDYVLKRHIENRIYR
FATVFPMYVAVTVSALILC
Run BLAST on NCBI

transcript from alignment at scaffold_10:111670..112028

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045632 ID=TCONS_00045632|Name=TCONS_00045632|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at scaffold_10:111670..112028 (Clytia hemisphaerica)
ttttcaacttCATCTCATTCAGGAGAACAAATTTTGTTAAAAGACAGCAG
CAAAAAGATGGCAGATGTTTTAATGAACAATCTGATGTTATCAGTCTACT
CCATTCTGTTCTGCCTCGGAGTATCCGGTAATCTACTGGTCATAACATAT
TACGGAATACACAAACGCCGGAACATGACAGCGCACAATGTATTTAAAAT
CCAATTAGCGATCACTGATATATTGGTTTGTATCGTGGTTCCTTTGCATA
TGTATGAAGACTACGTCTTGAAAAGACATATTGAAAACCGGATTTACCGG
TTCGCAACTGTTTTCCCGATGTATGTTGCCGTTACCGTATCAGCGTTGAT
TCTATGCGG

Coding sequence (CDS) from alignment at scaffold_10:111670..112028

>TCONS_00045632 ID=TCONS_00045632|Name=TCONS_00045632|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_10:111670..112028 (Clytia hemisphaerica)
ttttcaacttCATCTCATTCAGGAGAACAAATTTTGTTAAAAGACAGCAG
CAAAAAGATGGCAGATGTTTTAATGAACAATCTGATGTTATCAGTCTACT
CCATTCTGTTCTGCCTCGGAGTATCCGGTAATCTACTGGTCATAACATAT
TACGGAATACACAAACGCCGGAACATGACAGCGCACAATGTATTTAAAAT
CCAATTAGCGATCACTGATATATTGGTTTGTATCGTGGTTCCTTTGCATA
TGTATGAAGACTACGTCTTGAAAAGACATATTGAAAACCGGATTTACCGG
TTCGCAACTGTTTTCCCGATGTATGTTGCCGTTACCGTATCAGCGTTGAT
TCTATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029177XLOC_029177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045632-exon-scaffold_10-1491911889:111670..112028TCONS_00045632-exon-scaffold_10-1491911889:111670..112028Clytia hemisphaericaexon
TCONS_00045632-exon-scaffold_10-1510915933:111670..112028TCONS_00045632-exon-scaffold_10-1510915933:111670..112028Clytia hemisphaericaexon
TCONS_00045632-exon-scaffold_10-1575043694:111670..112028TCONS_00045632-exon-scaffold_10-1575043694:111670..112028Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045632-proteinTCONS_00045632-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:111670..112028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.608163	0.284677	0	0.246877	0	0	0.157301	0	0.671514	0.144128	1.95309	1.27391	0	0.263097	3.65887	4.68475	1.08475	0.739645	1.01576	2.26635	1.29725	0.692232	0.262517	0.267463
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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