TCONS_00045630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045630
Unique NameTCONS_00045630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045630 ID=TCONS_00045630|Name=TCONS_00045630|organism=Clytia hemisphaerica|type=transcript|length=435bp
CGTGATAAACTAAGAGAAATGAATACAgaggtggtacagtcactttcagt
TGGGGTTGTGGACAGCGAAATTGTCGttcaatatgaaatttgtcgttttt
tttgtctatttttagtaaatgtaggattctttagataaaccccctcgtAT
AAATACGGTAGAGGGAGAGTCACTTtactttcaatttaaaaaagagTATA
GTCATTTTCTCACCACGACTTTCAATAGCACGACCCAATACTTTGCGAAT
GTTTAGCTATTAAGCATCATAAGAAAGTCTCTTCACCCCTTCTGTCTTAA
AGTGCCCAAAAATAAGGACAGCTGATCTCGCTACAATAATTTACTAGTTG
TGTATCAAAAAGGTTTACCTAAGTAAAACAATCGTCTGGTGTACATGTTT
TTCTTGGGAGATTTCTCAAACAGTTTGAACATCAG
Run BLAST on NCBI

transcript from alignment at scaffold_10:73577..74011

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045630 ID=TCONS_00045630|Name=TCONS_00045630|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_10:73577..74011 (Clytia hemisphaerica)
CTGATGTTCAAACTGTTTGAGAAATCTCCCAAGAAAAACATGTACACCAG
ACGATTGTTTTACTTAGGTAAACCTTTTTGATACACAACTAGTAAATTAT
TGTAGCGAGATCAGCTGTCCTTATTTTTGGGCACTTTAAGACAGAAGGGG
TGAAGAGACTTTCTTATGATGCTTAATAGCTAAACATTCGCAAAGTATTG
GGTCGTGCTATTGAAAGTCGTGGTGAGAAAATGACTATActcttttttaa
attgaaagtaAAGTGACTCTCCCTCTACCGTATTTATacgagggggttta
tctaaagaatcctacatttactaaaaatagacaaaaaaaacgacaaattt
catattgaaCGACAATTTCGCTGTCCACAACCCCAactgaaagtgactgt
accacctcTGTATTCATTTCTCTTAGTTTATCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029175XLOC_029175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045630-exon-scaffold_10-1491911889:73577..74011TCONS_00045630-exon-scaffold_10-1491911889:73577..74011Clytia hemisphaericaexon
TCONS_00045630-exon-scaffold_10-1510915933:73577..74011TCONS_00045630-exon-scaffold_10-1510915933:73577..74011Clytia hemisphaericaexon
TCONS_00045630-exon-scaffold_10-1575043694:73577..74011TCONS_00045630-exon-scaffold_10-1575043694:73577..74011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:73577..74011 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346512	0.153081	0.710968	1.04336	0.423396	0	0.403648	0.755781	1.19057	1.31085	0	1.25458	1.35263	1.51477	1.06967	1.53056	0	0.63637	0.717681	1.15199	0.303557	0.888386	0	0.818192	0.168544	0.300842	1.83256	2.29723	0.522711	0.887599
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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