TCONS_00045626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045626
Unique NameTCONS_00045626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045626 ID=TCONS_00045626|Name=TCONS_00045626|organism=Clytia hemisphaerica|type=transcript|length=654bp
TGAGGAAAGGAAGAAGCTGTCACAAAGTAACTCAGGAGTTAAAACAAGAA
AGGCGGGACGCAAGCCTCAGCCGAGATATCTGTTTAAGGAATCCCACCCT
CAGTCAGAGACTCACGTTCAAGTCACTAGAACAGATCCCCTTATCCCAGC
ATTATCATTCTTACCACCAAGTGAAGACAGTAACAatgaaaaattccaaa
tttgTATGTTGGTTCTGTTCAAGCCTTTCCACGATTTTTCGAGTTTGTTT
AACGGTATTAGCTGGGATGATACGTATGAAAACACTGATTTTGAAACAAA
TGGTCTCCATATAAAAAACATCCAAGAAATGCATGTTGGTCTCAAAGAAA
AGGATAATGCTCGTGACGCAGAATCAAATGATGACAATGAACAGTTGGGT
ACAGATCAAACAGGCCAGGAAGACGATGAAATCGATTTTGTTCTTGAAGA
TCTTAACAATAATGCTAACAACACTCAATTACAAGAAAACGACGTTGATA
CCTTAACCTCTCAAGCTTTGGACATCATAAAATCCAGCGGATGTCTAGAA
ATGTCTCAGCAAAGTCAACAATCAAATAATGGAATGAGTTCTTATTCATC
ATCTAGTATTAGTCAGTCCGCGCCTACTACAACTTATCAACAGCGCAAAT
GGCG
Run BLAST on NCBI

protein sequence of TCONS_00045626-protein

>TCONS_00045626-protein ID=TCONS_00045626-protein|Name=TCONS_00045626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
EERKKLSQSNSGVKTRKAGRKPQPRYLFKESHPQSETHVQVTRTDPLIPA
LSFLPPSEDSNNEKFQICMLVLFKPFHDFSSLFNGISWDDTYENTDFETN
GLHIKNIQEMHVGLKEKDNARDAESNDDNEQLGTDQTGQEDDEIDFVLED
LNNNANNTQLQENDVDTLTSQALDIIKSSGCLEMSQQSQQSNNGMSSYSS
SSISQSAPTTTYQQRKW
Run BLAST on NCBI

transcript from alignment at scaffold_10:5206..5859

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045626 ID=TCONS_00045626|Name=TCONS_00045626|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at scaffold_10:5206..5859 (Clytia hemisphaerica)
CGCCATTTGCGCTGTTGATAAGTTGTAGTAGGCGCGGACTGACTAATACT
AGATGATGAATAAGAACTCATTCCATTATTTGATTGTTGACTTTGCTGAG
ACATTTCTAGACATCCGCTGGATTTTATGATGTCCAAAGCTTGAGAGGTT
AAGGTATCAACGTCGTTTTCTTGTAATTGAGTGTTGTTAGCATTATTGTT
AAGATCTTCAAGAACAAAATCGATTTCATCGTCTTCCTGGCCTGTTTGAT
CTGTACCCAACTGTTCATTGTCATCATTTGATTCTGCGTCACGAGCATTA
TCCTTTTCTTTGAGACCAACATGCATTTCTTGGATGTTTTTTATATGGAG
ACCATTTGTTTCAAAATCAGTGTTTTCATACGTATCATCCCAGCTAATAC
CGTTAAACAAACTCGAAAAATCGTGGAAAGGCTTGAACAGAACCAACATA
caaatttggaatttttcatTGTTACTGTCTTCACTTGGTGGTAAGAATGA
TAATGCTGGGATAAGGGGATCTGTTCTAGTGACTTGAACGTGAGTCTCTG
ACTGAGGGTGGGATTCCTTAAACAGATATCTCGGCTGAGGCTTGCGTCCC
GCCTTTCTTGTTTTAACTCCTGAGTTACTTTGTGACAGCTTCTTCCTTTC
CTCA

Coding sequence (CDS) from alignment at scaffold_10:5206..5859

>TCONS_00045626 ID=TCONS_00045626|Name=TCONS_00045626|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_10:5206..5859 (Clytia hemisphaerica)
CCATTTGCGCTGTTGATAAGTTGTAGTAGGCGCGGACTGACTAATACTAG
ATGATGAATAAGAACTCATTCCATTATTTGATTGTTGACTTTGCTGAGAC
ATTTCTAGACATCCGCTGGATTTTATGATGTCCAAAGCTTGAGAGGTTAA
GGTATCAACGTCGTTTTCTTGTAATTGAGTGTTGTTAGCATTATTGTTAA
GATCTTCAAGAACAAAATCGATTTCATCGTCTTCCTGGCCTGTTTGATCT
GTACCCAACTGTTCATTGTCATCATTTGATTCTGCGTCACGAGCATTATC
CTTTTCTTTGAGACCAACATGCATTTCTTGGATGTTTTTTATATGGAGAC
CATTTGTTTCAAAATCAGTGTTTTCATACGTATCATCCCAGCTAATACCG
TTAAACAAACTCGAAAAATCGTGGAAAGGCTTGAACAGAACCAACATAca
aatttggaatttttcatTGTTACTGTCTTCACTTGGTGGTAAGAATGATA
ATGCTGGGATAAGGGGATCTGTTCTAGTGACTTGAACGTGAGTCTCTGAC
TGAGGGTGGGATTCCTTAAACAGATATCTCGGCTGAGGCTTGCGTCCCGC
CTTTCTTGTTTTAACTCCTGAGTTACTTTGTGACAGCTTCTTCCTTTCCT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029171XLOC_029171Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045626-proteinTCONS_00045626-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045626-exon-scaffold_10-1491911889:5206..5859TCONS_00045626-exon-scaffold_10-1491911889:5206..5859Clytia hemisphaericaexon
TCONS_00045626-exon-scaffold_10-1510915933:5206..5859TCONS_00045626-exon-scaffold_10-1510915933:5206..5859Clytia hemisphaericaexon
TCONS_00045626-exon-scaffold_10-1575043694:5206..5859TCONS_00045626-exon-scaffold_10-1575043694:5206..5859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:5206..5859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.322542	0.934549	0.307498	0.479794	0	0.0832169	0.484634	0	0.0530228	0	0.0452706	0.0485823	0	0	0	0	0	0	0	0	0.256792	0.0763937	0	0	0	0.0901561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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