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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045619 ID=TCONS_00045619|Name=TCONS_00045619|organism=Clytia hemisphaerica|type=transcript|length=4431bpRun BLAST on NCBI protein sequence of TCONS_00045619-protein >TCONS_00045619-protein ID=TCONS_00045619-protein|Name=TCONS_00045619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1011bp MEAAHMKSVDELKKFFKVDDTEGLSKEAVEEALEKYGPNELPAEEGKSLLRun BLAST on NCBI transcript from alignment at scaffold_10:198903..222580- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045619 ID=TCONS_00045619|Name=TCONS_00045619|organism=Clytia hemisphaerica|type=transcript|length=23678bp|location=Sequence derived from alignment at scaffold_10:198903..222580- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_10:198903..222580- >TCONS_00045619 ID=TCONS_00045619|Name=TCONS_00045619|organism=Clytia hemisphaerica|type=CDS|length=54648bp|location=Sequence derived from alignment at scaffold_10:198903..222580- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045619 vs. Swiss-Prot (Human)
Match: AT2A2 (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Homo sapiens GN=ATP2A2 PE=1 SV=1) HSP 1 Score: 1363.98 bits (3529), Expect = 0.000e+0 Identity = 685/999 (68.57%), Postives = 820/999 (82.08%), Query Frame = 3
Query: 123 MEAAHMKSVDELKKFFKVDDTEGLSKEAVEEALEKYGPNELPAEEGKSLLTLVLEQFEDXXXXXXXXXXXXSFVLAFFEDGEDQLTAFVEPFVILLILILNAIMGVWQERNAESAIEALKEYEPEIAKVLRKGKAGVQRIKAKLLVPGDIVEVSVGDKVPADIRVTTIKSTVLRIDQSILTGESVSVLKHTDTIEDDRATNQDKKNLLFSGTNVSTGKALGIVIGTGVNTEIGKIRNKIAESDDEKTPLQEKLDEFGEQLSKVITVICIAVWAINIGHFNDPVHGGSWVKGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVNKILLVNTAASNDMTFTQFDITGSTYEPTGEVTVDGQKVNLDDYAALSELNLICSMCNDSGIDYNEVKHIYEKVGEPTEVALIVLVEKLNVTGLNLSQFTKAERAHCCNDAIREGYQKEFTMEFSRDRKSMSVFCSTTAGGRVTRSSDNMASKMFVKGAPEGILERCTKVRVGKETIDLTEGMKNQILEQVTVYGTGKDTLRCLAMATVDKPLSPEEMDLTESKNFIKYETEMTFVGVVGMLDPPRTEVRESIAECRTAGIRVIVITGDNKNTAEAICRRIGVFGENESTQGLSYSGREFDDLSEAEQRDACRNARLFSRVEPAHKSSIVEYLQGDGDVAAMTGDGVNDAPALKKAKIGVAMGSGTAVAKSASEMVLADDNFSTIVAAVEEGRAIYNNTKQFIRYLISSNIGEVVSIFLTAALGMPEALIPVQLLWVNLMTDGPPATALSFNPPEVDIMKKAPRKAKEPLISGWLFFRYLAIGVYVGIATVGSSAWWFMYYEGGPQMSYWQLTHHMQCSANPEAFAGMTCDIFKDLHPMTMALSVLVTIEMLNALNSISENQSLLVMPPWRNWSLLTAITASMLLHFLILYAPFMKAIFRVTPLNWTEWKAVLYFSIPVILLDEVLKFVTRNFIQP 3119
ME AH K+V+E+ F V+++ GLS E V++ E++G NELPAEEGK+LL LV+EQFEDLLVRILL+AA ISFVLA+FE+GE+ +TAFVEPFVILLIL+ NAI+GVWQERNAE+AIEALKEYEPE+ KV R+ + VQRIKAK +VPGDIVE++VGDKVPADIR+T+IKST LR+DQSILTGESVSV+KHTD + D RA NQDKKN+LFSGTN++ GKA+G+V+ TGVNTEIGKIR+++ ++ E+TPLQ+KLDEFGEQLSKVI++ICIAVW INIGHFNDPVHGGSW++GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSV ++ +++ + + +F ITGSTY P GEV D + VN Y L EL IC++CNDS +DYNE K +YEKVGE TE AL LVEK+NV L +K ERA+ CN I++ +KEFT+EFSRDRKSMSV+C+ R + SKMFVKGAPEG+++RCT +RVG + +T G+K +I+ + +G+G DTLRCLA+AT D PL EEM L +S NFIKYET +TFVG VGMLDPPR EV S+ CR AGIRVI+ITGDNK TA AICRRIG+FG++E +++GREFD+L+ + QRDAC NAR F+RVEP+HKS IVE+LQ ++ AMTGDGVNDAPALKKA+IG+AMGSGTAVAK+ASEMVLADDNFSTIVAAVEEGRAIYNN KQFIRYLISSN+GEVV IFLTAALG PEALIPVQLLWVNL+TDG PATAL FNPP++DIM K PR KEPLISGWLFFRYLAIG YVG ATVG++AWWF+ +GGP++S++QL+H +QC + F G+ C IF+ +PMTMALSVLVTIEM NALNS+SENQSLL MPPW N L+ +I SM LHFLILY + IF++TPLN T+W VL S+PVIL+DE LKFV RN+++P
Sbjct: 1 MENAHTKTVEEVLGHFGVNESTGLSLEQVKKLKERWGSNELPAEEGKTLLELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILVANAIVGVWQERNAENAIEALKEYEPEMGKVYRQDRKSVQRIKAKDIVPGDIVEIAVGDKVPADIRLTSIKSTTLRVDQSILTGESVSVIKHTDPVPDPRAVNQDKKNMLFSGTNIAAGKAMGVVVATGVNTEIGKIRDEMVATEQERTPLQQKLDEFGEQLSKVISLICIAVWIINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCRMFILDRVEGDTCSLNEFTITGSTYAPIGEVHKDDKPVNCHQYDGLVELATICALCNDSALDYNEAKGVYEKVGEATETALTCLVEKMNVFDTELKGLSKIERANACNSVIKQLMKKEFTLEFSRDRKSMSVYCTPNKPSRTS------MSKMFVKGAPEGVIDRCTHIRVGSTKVPMTSGVKQKIMSVIREWGSGSDTLRCLALATHDNPLRREEMHLEDSANFIKYETNLTFVGCVGMLDPPRIEVASSVKLCRQAGIRVIMITGDNKGTAVAICRRIGIFGQDEDVTSKAFTGREFDELNPSAQRDACLNARCFARVEPSHKSKIVEFLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPRNPKEPLISGWLFFRYLAIGCYVGAATVGAAAWWFIAADGGPRVSFYQLSHFLQCKEDNPDFEGVDCAIFESPYPMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILYVEPLPLIFQITPLNVTQWLMVLKISLPVILMDETLKFVARNYLEP 993 The following BLAST results are available for this feature:
BLAST of TCONS_00045619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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