TCONS_00045615 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045615
Unique Name	TCONS_00045615
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2890

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_10:116399..119288-

transcript sequence

>TCONS_00045615 ID=TCONS_00045615|Name=TCONS_00045615|organism=Clytia hemisphaerica|type=transcript|length=2890bp
ATTTAAGAGGAGAAGGGAAGTACAGAAAAGAActataaaaaagtttgatt
tacAAAATGTTCTGCAATCAGTTCTTGTTAAGAAGTTGAAAGTCAAACGC
ACATAACGCAGATGAAAAGACGAAACCTAATGAACATTTATTACAGATTT
CAACATGCTTCTCAAAGATGCGTCGTGGTTTAATGAttacaaatatattt
ttcaactgaATGAAAACTTAGAGTGCAGTAAATCTTTTGAATAATCAATT
TTGTGAGATGATTTAATTCCAACTCACTAGCTTGACGTCTATGTTTCAAA
TCTTCTGGAAGAATCTCTACGATGATTTGTGTCTCGGGCAACAGAATAAT
GTACTTGGAGTATTGTTGACAACCTGAGTCATCTTTCAAAGAGTGTGAGA
TGATATACTTACTAAACGATGAGGTTTCAAGATGTTGGAACAAACTCGGC
ATTTGTTTGTTATTTACTTGTTTACATCACGCTTTAGCATCCGTTATCCC
CAGTAGCCTGGAAGCTTCGCAATGCTGGAGGAATCTAAGTGTTGATTATT
GATCAACAGAATAATGTATTTGGAGAACAGCCTACAATCTATCTGTAGCA
TCTTTCGAAATATGAACTTAATGCTATACTTCCAAACCACTGACCATAGC
ATATATGTTTCTAAAAGCTGGAAACAACTCAACGTTGGTTAGTTTGTCGT
TTAGCATGATTTTTTTGCTAATGCTTTTGGTTAAACCATCGGAAGAAGTT
TGAAGCTGGAAATAAATATGTCATAGACATGGGCAGTGGCTAGATTTTGG
AATTAAATCTAGATTGGAAATCTGAGGCGCTTCCCTCCCTCCACTAGCCT
TTCAACACTTTATATATGTGTTCCAGACGGTATTTGGCTGACAATCGAAC
AAGTTATACGATCAGTTGATGGTTTTTCGAAGCTACAGTGAAACTATGGC
GataagaaaaacagaaaataacTATCTATGAACCATATGAAAACTGttgg
aaaaaatcgaatttcaatcaattttgatGTCGAACTTCGTAACAATCAAG
CAGGAACTATCAACAGAGTTAATTCATAGTGACGACTAGAGATACATACT
GCCAGACATTTAGTGTCGATTTAAgctgaaatgttttcaaaaaggcCCGA
GAATGTTTTCTAGTTTATTGAGATCAATGTTTGGTTTGCTTACATGTTCT
CTACGATTACTTTGCCATCCACAACTTGAAATACCGGTGGACTGGCAATC
AGGCCGACATTGTAGGTGGCGATCTGAGGACGAGTCTACGCGCCTCTGTC
ATTAATTGACTCTCATGAACCTTAAACAGTTATTTTTGGTCAAACCTATA
AACTCTCTTTCTCTTGAATTTCAAGTGGCATAATCTGAGAAAAGTCTAGA
AACCATTCGTCAAAAACCACCCCAACGGAGATCAAGGGAATCGTTAGGGT
GGTTTTTGACAAATGGTTTCTATACCTTTCTTGATGGAGCCATCTGATGA
TCCAGTTAGGAACAGAGTTCAAGGGTCCGACCGAAGAGACACTGTTAGAG
GAACCTGAGAGTCTTTGATGACAGAGGCGCATAGACTCGTCCCTAGATCG
TCACCTACAATGTCGGCTTGATTGCCGGTCCGCCGGTATTTCAAGTTGTA
AAACCGAAATCGTGGTCCTGTCGGATTTTTCGGACTTGTTCCGGACTGCC
AACCTCTGGTCGTCCAACTTGGACTTGGCTGATATGTATTTTGGATGATT
CGTCTAAtgaccttttgatttttcaagtttgttAAAATCATGTGGGCTTT
TTATCGTGATTTTCAAACTTGATAGAAATCATCAAGACATTAGACGAAGC
ATTCGAAATATTTGTCAGACGAGTCCATGTTGGTCGATCAGAGGTTGGCA
GTCCGGAACAAGTCCGGGAATCCGACAGGTCAAACGATTTCGGTTTTTTG
TCATTGGAATACTAAATAGTTATATTTAGTTCGGTGTGGGAGTATTGATG
ATGTTGAGGCTAACCTTTGGGTACCATCTTTTGTTTTACGGTTGGCCTAG
CAACATCTGAGAAAGCAAACACACGCACCCAAATTTATCCTGTATAAATG
Tatacaatgttttttttttgttttttttgtcatttcctttaatgtgaaaa
aaagaaaagatttttatttttgaatatctCTAATGGTTATTTTGCACACT
GCAAAACCGTTTCCATTTTTCACGACGTCTTGTTTCATGTCATTAAGACA
ATTTTTATTCAGGATTTCAATTTAATGAGTACCGTCCAAGTTGACGAAac
ctatttgcagcactgatCTTATATAGAACGACGCTCTACTCCTTAGATTC
CTTCACTAAACCTTGACCGCAAgaagagaggcatcaagtaaaATCTTTTA
GGAATTTGATATATGAACCTACTGAGCTAAACCAGAACTTAGCGCATTGC
agccacagatttataaagaagTGTGTCGTATTTCAGTAGGAAAttctacc
taggtcacgtgatattacaatagaatttcagcgcttgaccaatcagaagc
ttcgcgggtttgtgaaaataaaagcttttttgcttggaagaacTTAAAGC
ACGCCCtccgggctttacagaaatctgtgattGTAGCCGGGCTCTTCTTC
ATTGTAACCACGGCCGGTAGTGAATTAACAatcaaatgtatttttttatt
attctttaTACACACAGGAGGTGCACAGATCATTGACATGATGATGTTAG
TAGTTGATGTTGTGAAAGGAATGCAAACACAAACTGCAGAATGTCTTGTC
ATTGGTGAAATTCTTTGTGAAAAGATGGTCGTTGTCCTCAACAAAGTTGA
TCTCATTCCTGAACAGAAGCGACAAGCCACTATAGAAAAG

Run BLAST on NCBI

transcript from alignment at scaffold_10:116399..119288-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045615 ID=TCONS_00045615|Name=TCONS_00045615|organism=Clytia hemisphaerica|type=transcript|length=2890bp|location=Sequence derived from alignment at scaffold_10:116399..119288- (Clytia hemisphaerica)
ATTTAAGAGGAGAAGGGAAGTACAGAAAAGAACTATAAAAAAGTTTGATT
TACAAAATGTTCTGCAATCAGTTCTTGTTAAGAAGTTGAAAGTCAAACGC
ACATAACGCAGATGAAAAGACGAAACCTAATGAACATTTATTACAGATTT
CAACATGCTTCTCAAAGATGCGTCGTGGTTTAATGATTACAAATATATTT
TTCAACTGAATGAAAACTTAGAGTGCAGTAAATCTTTTGAATAATCAATT
TTGTGAGATGATTTAATTCCAACTCACTAGCTTGACGTCTATGTTTCAAA
TCTTCTGGAAGAATCTCTACGATGATTTGTGTCTCGGGCAACAGAATAAT
GTACTTGGAGTATTGTTGACAACCTGAGTCATCTTTCAAAGAGTGTGAGA
TGATATACTTACTAAACGATGAGGTTTCAAGATGTTGGAACAAACTCGGC
ATTTGTTTGTTATTTACTTGTTTACATCACGCTTTAGCATCCGTTATCCC
CAGTAGCCTGGAAGCTTCGCAATGCTGGAGGAATCTAAGTGTTGATTATT
GATCAACAGAATAATGTATTTGGAGAACAGCCTACAATCTATCTGTAGCA
TCTTTCGAAATATGAACTTAATGCTATACTTCCAAACCACTGACCATAGC
ATATATGTTTCTAAAAGCTGGAAACAACTCAACGTTGGTTAGTTTGTCGT
TTAGCATGATTTTTTTGCTAATGCTTTTGGTTAAACCATCGGAAGAAGTT
TGAAGCTGGAAATAAATATGTCATAGACATGGGCAGTGGCTAGATTTTGG
AATTAAATCTAGATTGGAAATCTGAGGCGCTTCCCTCCCTCCACTAGCCT
TTCAACACTTTATATATGTGTTCCAGACGGTATTTGGCTGACAATCGAAC
AAGTTATACGATCAGTTGATGGTTTTTCGAAGCTACAGTGAAACTATGGC
GATAAGAAAAACAGAAAATAACTATCTATGAACCATATGAAAACTGTTGG
AAAAAATCGAATTTCAATCAATTTTGATGTCGAACTTCGTAACAATCAAG
CAGGAACTATCAACAGAGTTAATTCATAGTGACGACTAGAGATACATACT
GCCAGACATTTAGTGTCGATTTAAGCTGAAATGTTTTCAAAAAGGCCCGA
GAATGTTTTCTAGTTTATTGAGATCAATGTTTGGTTTGCTTACATGTTCT
CTACGATTACTTTGCCATCCACAACTTGAAATACCGGTGGACTGGCAATC
AGGCCGACATTGTAGGTGGCGATCTGAGGACGAGTCTACGCGCCTCTGTC
ATTAATTGACTCTCATGAACCTTAAACAGTTATTTTTGGTCAAACCTATA
AACTCTCTTTCTCTTGAATTTCAAGTGGCATAATCTGAGAAAAGTCTAGA
AACCATTCGTCAAAAACCACCCCAACGGAGATCAAGGGAATCGTTAGGGT
GGTTTTTGACAAATGGTTTCTATACCTTTCTTGATGGAGCCATCTGATGA
TCCAGTTAGGAACAGAGTTCAAGGGTCCGACCGAAGAGACACTGTTAGAG
GAACCTGAGAGTCTTTGATGACAGAGGCGCATAGACTCGTCCCTAGATCG
TCACCTACAATGTCGGCTTGATTGCCGGTCCGCCGGTATTTCAAGTTGTA
AAACCGAAATCGTGGTCCTGTCGGATTTTTCGGACTTGTTCCGGACTGCC
AACCTCTGGTCGTCCAACTTGGACTTGGCTGATATGTATTTTGGATGATT
CGTCTAATGACCTTTTGATTTTTCAAGTTTGTTAAAATCATGTGGGCTTT
TTATCGTGATTTTCAAACTTGATAGAAATCATCAAGACATTAGACGAAGC
ATTCGAAATATTTGTCAGACGAGTCCATGTTGGTCGATCAGAGGTTGGCA
GTCCGGAACAAGTCCGGGAATCCGACAGGTCAAACGATTTCGGTTTTTTG
TCATTGGAATACTAAATAGTTATATTTAGTTCGGTGTGGGAGTATTGATG
ATGTTGAGGCTAACCTTTGGGTACCATCTTTTGTTTTACGGTTGGCCTAG
CAACATCTGAGAAAGCAAACACACGCACCCAAATTTATCCTGTATAAATG
TATACAATGTTTTTTTTTTGTTTTTTTTGTCATTTCCTTTAATGTGAAAA
AAAGAAAAGATTTTTATTTTTGAATATCTCTAATGGTTATTTTGCACACT
GCAAAACCGTTTCCATTTTTCACGACGTCTTGTTTCATGTCATTAAGACA
ATTTTTATTCAGGATTTCAATTTAATGAGTACCGTCCAAGTTGACGAAAC
CTATTTGCAGCACTGATCTTATATAGAACGACGCTCTACTCCTTAGATTC
CTTCACTAAACCTTGACCGCAAGAAGAGAGGCATCAAGTAAAATCTTTTA
GGAATTTGATATATGAACCTACTGAGCTAAACCAGAACTTAGCGCATTGC
AGCCACAGATTTATAAAGAAGTGTGTCGTATTTCAGTAGGAAATTCTACC
TAGGTCACGTGATATTACAATAGAATTTCAGCGCTTGACCAATCAGAAGC
TTCGCGGGTTTGTGAAAATAAAAGCTTTTTTGCTTGGAAGAACTTAAAGC
ACGCCCTCCGGGCTTTACAGAAATCTGTGATTGTAGCCGGGCTCTTCTTC
ATTGTAACCACGGCCGGTAGTGAATTAACAATCAAATGTATTTTTTTATT
ATTCTTTATACACACAGGAGGTGCACAGATCATTGACATGATGATGTTAG
TAGTTGATGTTGTGAAAGGAATGCAAACACAAACTGCAGAATGTCTTGTC
ATTGGTGAAATTCTTTGTGAAAAGATGGTCGTTGTCCTCAACAAAGTTGA
TCTCATTCCTGAACAGAAGCGACAAGCCACTATAGAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029164	XLOC_029164	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045615-exon-scaffold_10-1575043694:116399..119288	TCONS_00045615-exon-scaffold_10-1575043694:116399..119288	Clytia hemisphaerica	exon
TCONS_00045615-exon-scaffold_10-1510915933:116399..119288	TCONS_00045615-exon-scaffold_10-1510915933:116399..119288	Clytia hemisphaerica	exon
TCONS_00045615-exon-scaffold_10-1491911889:116399..119288	TCONS_00045615-exon-scaffold_10-1491911889:116399..119288	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:116399..119288 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.615756	0.547142	0.530231	0.435864	1.06002	0.476327	1.69263	1.8975	2.96934	4.54279	4.22738	2.59117	8.26875	6.4506	10.3855	13.3817	12.749	12.2254	9.43683	9.569	12.7078	10.9155	9.44955	10.0718	16.3262	15.3441	12.2482	10.8431	7.09215	6.42915

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00045615 vs. Swiss-Prot (Human)

BLAST of TCONS_00045615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00045615 (transcript) - C. hemisphaerica