TCONS_00045607 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045607
Unique Name	TCONS_00045607
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1449

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_10:17817..23983-
coding sequence from alignment at scaffold_10:17817..23983-

transcript sequence

>TCONS_00045607 ID=TCONS_00045607|Name=TCONS_00045607|organism=Clytia hemisphaerica|type=transcript|length=1449bp
TCGTTTAGAGTAGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGT
TTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTGAAACACTTTTGC
ACGTGGCTTGTAATAAGCGTAAAATTCCTCGAATCAAAGCGCTCATCGAA
ATGGGTGCTAAAGTTAACACACAAGACAACGCAGGGTGGACGCCCTTACA
CGAGGCGTGTTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCACGAAAT
CCCCCGATATTGATTTAACGTTGACACGTGGTAAAAAGACGCAATGCATT
GATGGAACTACCGCATTGCATGACGCTGTAGAGAATAATTTCCTTAATAT
CGCCGAGTTCTTGTTACAAAAAGGAGGTCGAGACCTACTTCATTTGAGAA
GAGCTGATGGGAAGACACCACTTGATATTTGCCGAGAACCGTCGGCAATG
AAaaccttgttgaaaagatatgagAATGTGGATATGAGTAGCACAAATAA
AGAAATGTACAAGACTTTCGTTTCACCTGAACCTCAGAATATGGAATTAT
TTTTACGAATACTTTTGCAGCTTATCACCAGTTACCGGGACTCGAACATA
GACGGCTTAAGATGCAGTTCGAGCCAACTTGAAGCCCAATACAATGATTT
ATTGATGCATGTCAAATTACTGAACGGGCATAAGATACCCCTCAAATGCA
AACTGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAAGAGAGAAGT
ATTACATATGATTTTATTACTGAAGGGTTTTATTCGTTCATACTTCAGAG
GTCAATACGGGGATTTGTTAAGATCAGTTTGACGATAATTATTGTAGAAA
GGTCTCTTTTagtttttaaagaagaattttCACTCTTTTATATGTCATAT
CGACCTACAGTTTATGAAATTCGAAGCTACGACCCCAAGACTATGGAGTC
GATTCAATACTATGTAGTTAAATTACTCCGAACTCTTTTTACCCAACCCA
AGGCAAACTTTACCGTTATAATGGTAGGTATTCATTCTTCTGCCTGTCTC
TCTCGTCACCCTCGTCGATCCTCTTTTTCACCCTTACCCTTCTTCCCCTA
CATATAGTTGTATCAGTAGTGGCTTCGACTTAACCGATAGATATTTAAAG
ATAACAAACCTTTCATGACTTATTTTAagtgcaacgactgcctcgttttg
aaaccatgaCGATTCTATCTCTTGAGACTTCAAGTGTTGCTTTTTAAATA
GAGTGAATTTCGAGGTAATGCATGAAAAGCTGTACCtaagaaatatttga
aagcAAACCTGattaaatacacctttcccgaattaTTTGGTATTTTTCGA
AGGTTTTCAAACcatattgaaaactatatatttgtattcctcctataaag
acaagtgcatgctgaaaatttgagctcaaaagcttttttctatcaattt

Run BLAST on NCBI

protein sequence of TCONS_00045607-protein

>TCONS_00045607-protein ID=TCONS_00045607-protein|Name=TCONS_00045607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
SFRVAQQSPSNSVSPLVSPKRLNKPNGKGETLLHVACNKRKIPRIKALIE
MGAKVNTQDNAGWTPLHEACCFGNHEVVQELTKSPDIDLTLTRGKKTQCI
DGTTALHDAVENNFLNIAEFLLQKGGRDLLHLRRADGKTPLDICREPSAM
KTLLKRYENVDMSSTNKEMYKTFVSPEPQNMELFLRILLQLITSYRDSNI
DGLRCSSSQLEAQYNDLLMHVKLLNGHKIPLKCKLTLKQIKRVLFS

Run BLAST on NCBI

transcript from alignment at scaffold_10:17817..23983-

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045607 ID=TCONS_00045607|Name=TCONS_00045607|organism=Clytia hemisphaerica|type=transcript|length=6167bp|location=Sequence derived from alignment at scaffold_10:17817..23983- (Clytia hemisphaerica)
TCGTTTAGAGTAGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGT
TTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTACTGGTCACAACA
TCCATCGTTTTTGTTTAAGATTTCATGTTTTTTTTTGTAAGCATACAAAA
TTTCGAAAACAGACTCGGAGATGCTTAGGTCGAGGGCTTGACAAGGCTGA
AAAATGCGCATAAGGGTGCTTATATCCCAAGCAAAATAGTAGGGAAATTC
CGAAAGTCCGTAAAATCCCAACCAAGATAAGGAAAATAATTTTTTTGTAG
GCTCAAGGTAATGTTTAGCATATGCTTAAATTTTTGCCATATCTGATCCT
AAATATGCTTGTAAGTGCAATGCCTTTAATAAATATGTATTGTACTTACG
GAACAATACTAAAGGAACAACTTTTTCAAATTAGTTGTACATCAGCACTA
CCCGATTTTTTGTCATTTTGGCGCGTTTGATTGTTGTCTGAACTTTTGAA
TAAAACTGTTTTTGAAGTTCTTTCGGGAATATTTATAACAAATTTAGAAA
TTGGGCTAATCATGGTCCTTAAATTCCAAATTCAATTCGACACAAGATTT
TCGACGAGAGCTTCCCGATAGCGATAATAAATTGATAAATCTCAATAAGG
CACAATTGGTGCATATGTTTTTTTTGAATAAGGTCCCAAAAACAATTCTT
GCAAAGATTTGGACAGAAATTCTTATATTACGACTGTTAAATGATCCGTT
TTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGTAAA
ATTCCTCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACACA
AGACAACGCAGGGTGGACGCCCTTACACGAGGCGTGTTGCTTTGGTAACC
ACGAAGTTGTGCAAGAACTCACGAAATCCCCCGGTTAGTCTTATCAATTG
TGAATTATCGCCCTGAATTTCTTGAGAAATATTATAAAAGATCATCTAAA
ATACAGTTATGCGAGGGACTTAAGTTGCAATCTCACAGTTTTCATTTGAC
TTTATTTCGCGAAATAGGCAAATTCCCGCAATTAAAATAGTGAAAATAGC
ACGAAAATCACCACAAAACTTTTTGATATTTTCTAGATATTGATTTAACG
TTGACACGTGGTAAAAAGACGCAATGCATTGATGGAACTACCGCATTGCA
TGACGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTACAAA
AAGGAGGTATGTGCATAATAGAAAAGGTTAACCAGTCACACCTTCACAGC
TGTAGCCTGTACCAAACTCTTCNNAACCAGTCACACCTTCACAACTGTAG
CCTATACCAAACTCTTCTTCGCTGACTGAAAAGATAACGCGTAAGGTTTG
TGATGGTTATGCAACATTTCGTGCCTCAGACTTTTTTCCAAAAATCTCTG
AATGTCTCTGCGGTGAAGCGTAACTATTTTCAGCATTCTTACTCTAGGGG
CTGAGTTAGGTCCCCGTATGCACATCGGCGTATAGTCATTTTTTCTTTTG
ATCATGAAAGTATAGTCCTTGAAGAGTCAGAAAACGTGTGTGGCGTTATT
TGGATCAGGCTCAAATTTCCATAATGGCGGATTTTAGATTTTCAACCCTT
TTTAGCCCTCTTGCTTGAAAAAAAAATTTGGTATATGATATGCAAGGTAT
AAAGCTCAAAAAATATTTTTCTTAGTCTAGCAGAGCCTAAGAGCCCATGT
GACGAAAGAAAATTTTGAATCCGCCATTATGGATTTGGAAATTTATGTAG
AAAAAAAACTTTTCCTGAATTTTATTATTTGAACGGTAGGCAAGACCCTC
CGAAAATTTCAAGTAAATTAAGTAAGCCAATCAAATGTTACAGCCACGGA
AATCTGGAACCAAAAGTAGTCATTTCAAAAAATCGAAATCGTAAGTGCTT
CCTATCTCCAGATAACGAAATTTTCAGACCATGATTTTGACCTTTTTTTT
AATCAACATAAAATTTGTGACTGATTGGTATATAATAGGGTATGTTTAAA
GTCAAAAAAAATTTTTTTCAAGCAAGAGGGCTAAAAAGGGTTGAAAATCT
AAAATCCGCCATTATGGAAATTTGTGCCTGATCCAAATAACGCCACACAC
GTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACACACGTTTT
CTGACTCTTCAAGGACTATACTTTCATGATCAAAAGAAAAAATGACTATA
CGCCGATGCGCATACGAGACCTAACTCAGCCCCTAGAGTATCTATTTAGC
TCAACTAATAAAGTGATGCTAAGGCCAGTCTCCACTTGCGCGCGTTTCGA
TCGCACTTTTTCGAGTAAAGCTTTCACGCTATTGGTCAAAAGAAAAATGA
AGCAACTCCATTGGCGCGATCTGATGTAACGGTTGAAAAAAGTTGAAATG
TGTTCAACTTTTTCTTCGAGCGCACGCTACATTTTTATGACGTAATCTTT
TTTCCAAGCAAAAAAGATTGAAGCCAAAAAGTGCGGTCGCAGTGCGCGGA
AGTGGATACCGGACTTTACATTTAACACATCAATGCAATGGTATCTTTCA
TTTTTAAAAAGAGCACTCCGACGCTTTTGTTTTCTCGGATTTTGTCTCAG
AAAACTGGAACCAACCACTGACCTTTACATATCTCTGGACCAAGCTATAT
CCGCCATCTTTGATCGAAGTTCTTTTGAAAGTTTGTACCTGTTTTGAAGT
TCAAAAACATACAGACGTCAGTACTACGATCAAGACGTCAAATCACAGTA
GAGCTGACAGTTAGTTGGTCTTAAAGCGGCTGTATTTCTTTGTGTGTTTT
AGTTAGAGAGTCGTTGTAATACAATTTTTTGCTCAGAATTTCATGCACTA
TCAGATGGTACCAATCATTTTCGTTTATTTTGACTTTTGAAAATAAGCAA
TTTCTCTACCCCTTATTTTCTTTCGCAGTTTTACCTATGGCGTCCCTATT
TTGGTCAAAGTTCAACAATCACTTCTATTGAAAATTCTATTGTAAAAACG
TTGATTAGGTCATTAAATGAAAGTCCATAAAAGACGGCTCGCCATACAAA
TCGGACGGTTTCTACATGATTTGACGATAAAAATGAAAATTTGTTTTTCC
TTTTTTGCCGATTACTAGTTCAATTTTTAAGAATANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTC
GACATAAACTCCCTTAAGGGCAAGAGACCTGGTATATGACGAGCCGTTTT
TCCATTGTTTTCAAAAAGCTGTTTTTCCATCTCTTTACATTCCTCTGAAT
ACATATACTGTTCTTTGGAAGAGACTAAAAATAGCTAGGTCGTAAAAAAC
GCATAATATTTTGCTTGGCCGGCATTGAGTAACTTGGTCCAGGGATATAT
AAATGTCAGTGGGAACAACTGAGACATAGAATCTCGCTTACTTTCAAAAT
ATGAAAATAGCCCGTGGCGGGCGTGCTAGTACAGGCCACCACAGCTGAGA
TATTTGAAAACTTGTGTATGATCGGGTGGATGATAGTTTTTTTCTGATTA
TTTGCACAAAGATGCGTAATATTTTATTATTATTATATTATTGATAACAA
ATCCAACCATCAAGTATGGTTTAATTGTCAATAAAACTGATTTTTGATGC
CGGTACTTTCTAACAATCGCCGGAACAGCCGAATATCGCCGGAAAAACGG
TTTTTCTTGAATTTCTCGAGCTTTACTTTATATTTTTAATGAAATTTTGC
ACACTGATGCAAAATGGCAATACCTAAAATGTGAAGGAGCCTGATTTTTG
AAGAAAAAAAATATCGGCCAAAAATGCCTATAATATGCCGTCAAAATCGG
TTTGTTGCCATTTTGTCGAGATTTCATTAATGGTTTTTCCCGATTTTTGC
ACAAAGATGTGTATCAGCAATGCCCTAAGTGTGGCCGATTCGGATTTTTG
AGAATCATGTTTTTCCGGTCGAAAATACTGGAAGTATGCCGGAAATCGCC
GTTTTTGCAGATTTGAATTGGGCTTTTTCCATTCATATATTTCTTTGTTT
TTTCACTTAAAAAATTATTGATAACAATGCCACCATCAAGCATGATTCAA
TGATTCAATTTTGCAACCGGAACTTTCTATTTCTTTTTTCCCTAACCCCC
CCCCCACCCATCAACAATCAATGATGAAATTTAATGCATTTTCGCTAACC
GCTAATATTTTCTTAATGATTGTTTTTCTCCTTATTGCTATCTAAGTTTC
ATCATCAGGTAGGTCCATTCAGCATGTTATCTGTTAAATGTTTATGCCGT
CTCTTACCAAGCCGTGTTATAATTTTCTTTGGTTTTGTCTACAGGTCGAG
ACCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGC
CGAGAACCGTCGGCAATGAAAACCTTGTTGAAAAGATATGAGAATGTGGA
TATGAGTAGCACAAATAAAGAAATGTACAAGACTTTCGTTTCACCTGAAC
CTCAGAATATGGAATTATTTTTACGAATACTTTTGCAGCTTATCACCAGT
TACCGGGACTCGAACATAGACGGCTTAAGATGCAGTTCGAGCCAACTTGA
AGCCCAATACAATGATTTATTGATGCATGTCAAATTACTGAACGGGCATA
AGATACCCCTCAAATGCAAACTGACTTTGAAACAAATTAAACGCGTTTTG
TTTAGCTAAGAGAGAAGTATTACATATGATTTTATTACTGAAGGGTTTTA
TTCGTTCATACTTCAGAGGTCAATACGGGGATTTGTTAAGATCAGTTTGA
CGATAATTATTGTAGAAAGGTCTCTTTTAGTTTTTAAAGAAGAATTTTCA
CTCTTTTATATGTCATATCGACCTACAGTTTATGAAATTCGAAGCTACGA
CCCCAAGACTATGGAGTCGATTCAATACTATGTAGTTAAATTACTCCGAA
CTCTTTTTACCCAACCCAAGGCAAACTTTACCGTTATAATGGTAGGTATT
CATTCTTCTGCCTGTCTCTCTCGTCACCCTCGTCGATCCTCTTTTTCACC
CTTACCCTTCTTCCCCTACATATAGTTGTATCAGTAGTGGCTTCGACTTA
ACCGATAGATATTTAAAGATAACAAACCTTTCATGACTTATTTTAAGTGC
AACGACTGCCTCGTTTTGAAACCATGACGATTCTATCTCTTGAGACTTCA
AGTGTTGCTTTTTAAATAGAGTGAATTTCGAGGTAATGCATGAAAAGCTG
TACCTAAGAAATATTTGAAAGCAAACCTGATTAAATACACCTTTCCCGAA
TTATTTGGTATTTTTCGAAGGTTTTCAAACCATATTGAAAACTATATATT
TGTATTCCTCCTATAAAGACAAGTGCATGCTGAAAATTTGAGCTCAAAAG
CTTTTTTCTATCAATTT

Coding sequence (CDS) from alignment at scaffold_10:17817..23983-

>TCONS_00045607 ID=TCONS_00045607|Name=TCONS_00045607|organism=Clytia hemisphaerica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_10:17817..23983- (Clytia hemisphaerica)
GTCGAGACCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGAT
ATTTGCCGAGAACCGTCGGCAATGAAAACCTTGTTGAAAAGATATGAGAA
TGTGGATATGAGTAGCACAAATAAAGAAATGTACAAGACTTTCGTTTCAC
CTGAACCTCAGAATATGGAATTATTTTTACGAATACTTTTGCAGCTTATC
ACCAGTTACCGGGACTCGAACATAGACGGCTTAAGATGCAGTTCGAGCCA
ACTTGAAGCCCAATACAATGATTTATTGATGCATGTCAAATTACTGAACG
GGCATAAGATACCCCTCAAATGCAAACTGACTTTGAAACAAATTAAACGC
GTTTTGTTTAGCTAAATATTGATTTAACGTTGACACGTGGTAAAAAGACG
CAATGCATTGATGGAACTACCGCATTGCATGACGCTGTAGAGAATAATTT
CCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTGAAACACTTTTGC
ACGTGGCTTGTAATAAGCGTAAAATTCCTCGAATCAAAGCGCTCATCGAA
ATGGGTGCTAAAGTTAACACACAAGACAACGCAGGGTGGACGCCCTTACA
CGAGGCGTGTTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCACGAAAT
CCCCCGTCGTTTAGAGTAGCCCAACAATCACCATCGAATTCAGTGTCACC
TTTGGTTTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTCGAGACC
TACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCCGA
GAACCGTCGGCAATGAAAACCTTGTTGAAAAGATATGAGAATGTGGATAT
GAGTAGCACAAATAAAGAAATGTACAAGACTTTCGTTTCACCTGAACCTC
AGAATATGGAATTATTTTTACGAATACTTTTGCAGCTTATCACCAGTTAC
CGGGACTCGAACATAGACGGCTTAAGATGCAGTTCGAGCCAACTTGAAGC
CCAATACAATGATTTATTGATGCATGTCAAATTACTGAACGGGCATAAGA
TACCCCTCAAATGCAAACTGACTTTGAAACAAATTAAACGCGTTTTGTTT
AGCTAAATATTGATTTAACGTTGACACGTGGTAAAAAGACGCAATGCATT
GATGGAACTACCGCATTGCATGACGCTGTAGAGAATAATTTCCTTAATAT
CGCCGAGTTCTTGTTACAAAAAGGAGGTGAAACACTTTTGCACGTGGCTT
GTAATAAGCGTAAAATTCCTCGAATCAAAGCGCTCATCGAAATGGGTGCT
AAAGTTAACACACAAGACAACGCAGGGTGGACGCCCTTACACGAGGCGTG
TTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCACGAAATCCCCCGTCG
TTTAGAGTAGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGTTTC
ACCCAAACGACTCAATAAACCGAACGGAAAAGGTCGAGACCTACTTCATT
TGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCCGAGAACCGTCG
GCAATGAAAACCTTGTTGAAAAGATATGAGAATGTGGATATGAGTAGCAC
AAATAAAGAAATGTACAAGACTTTCGTTTCACCTGAACCTCAGAATATGG
AATTATTTTTACGAATACTTTTGCAGCTTATCACCAGTTACCGGGACTCG
AACATAGACGGCTTAAGATGCAGTTCGAGCCAACTTGAAGCCCAATACAA
TGATTTATTGATGCATGTCAAATTACTGAACGGGCATAAGATACCCCTCA
AATGCAAACTGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAAATA
TTGATTTAACGTTGACACGTGGTAAAAAGACGCAATGCATTGATGGAACT
ACCGCATTGCATGACGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTT
CTTGTTACAAAAAGGAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGC
GTAAAATTCCTCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAAC
ACACAAGACAACGCAGGGTGGACGCCCTTACACGAGGCGTGTTGCTTTGG
TAACCACGAAGTTGTGCAAGAACTCACGAAATCCCCCGTCGTTTAGAGTA
GCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACCCAAACG
ACTCAATAAACCGAACGGAAAAGGTCGAGACCTACTTCATTTGAGAAGAG
CTGATGGGAAGACACCACTTGATATTTGCCGAGAACCGTCGGCAATGAAA
ACCTTGTTGAAAAGATATGAGAATGTGGATATGAGTAGCACAAATAAAGA
AATGTACAAGACTTTCGTTTCACCTGAACCTCAGAATATGGAATTATTTT
TACGAATACTTTTGCAGCTTATCACCAGTTACCGGGACTCGAACATAGAC
GGCTTAAGATGCAGTTCGAGCCAACTTGAAGCCCAATACAATGATTTATT
GATGCATGTCAAATTACTGAACGGGCATAAGATACCCCTCAAATGCAAAC
TGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAAATATTGATTTAA
CGTTGACACGTGGTAAAAAGACGCAATGCATTGATGGAACTACCGCATTG
CATGACGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTACA
AAAAGGAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGTAAAATTC
CTCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACACAAGAC
AACGCAGGGTGGACGCCCTTACACGAGGCGTGTTGCTTTGGTAACCACGA
AGTTGTGCAAGAACTCACGAAATCCCCCGTCGTTTAGAGTAGCCCAACAA
TCACCATCGAATTCAGTGTCACCTTTGGTTTCACCCAAACGACTCAATAA
ACCGAACGGAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029161	XLOC_029161	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045607-exon-scaffold_10-1575043694:23899..23983	TCONS_00045607-exon-scaffold_10-1575043694:23899..23983	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1575043694:23051..23221	TCONS_00045607-exon-scaffold_10-1575043694:23051..23221	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1575043694:22728..22847	TCONS_00045607-exon-scaffold_10-1575043694:22728..22847	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1575043694:17817..18889	TCONS_00045607-exon-scaffold_10-1575043694:17817..18889	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1510915933:23899..23983	TCONS_00045607-exon-scaffold_10-1510915933:23899..23983	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1510915933:23051..23221	TCONS_00045607-exon-scaffold_10-1510915933:23051..23221	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1510915933:22728..22847	TCONS_00045607-exon-scaffold_10-1510915933:22728..22847	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1510915933:17817..18889	TCONS_00045607-exon-scaffold_10-1510915933:17817..18889	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1491911889:23899..23983	TCONS_00045607-exon-scaffold_10-1491911889:23899..23983	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1491911889:23051..23221	TCONS_00045607-exon-scaffold_10-1491911889:23051..23221	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1491911889:22728..22847	TCONS_00045607-exon-scaffold_10-1491911889:22728..22847	Clytia hemisphaerica	exon
TCONS_00045607-exon-scaffold_10-1491911889:17817..18889	TCONS_00045607-exon-scaffold_10-1491911889:17817..18889	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045607-protein	TCONS_00045607-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:17817..23983 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.945134	1.09445	0.539081	0.361678	35.6871	33.6183	26.0399	38.0459	15.6192	17.8308	16.9648	15.0596	22.2805	22.7696	1.11995	1.11685	0.656339	1.00105	0.949894	0.824725	1.28417	1.02399	1.42602	1.7816	23.6458	47.1395	0.247532	0.503728	0.98308	0.913763

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00045607 vs. Swiss-Prot (Human)
Match: SLF1 (SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens GN=SLF1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.158e-24
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 1

Query:   64 LNKPNGKGETLLHVACNKRKIPRIKALIEM-GAKVNTQDNAGWTPLHEACCFGNHEVVQE-LTKSPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGGRDLLHLRRADGKTPLDICREPSAMKTLL 462
             +K N KGET LH AC   ++ ++  L+ + G  +N +DNAGWTPLHEAC +GN   VQE L + P++DL LT+      +DG T LHDA+ N  + I + LLQ GG  LL  R A G+ PLD    P   + L 
Sbjct:  800 FHKTNLKGETALHRACINNQVEKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDL-LTQ------VDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNAKGELPLDYVVSPQIKEELF 927

The following BLAST results are available for this feature:

BLAST of TCONS_00045607 vs. Swiss-Prot (Human)

BLAST of TCONS_00045607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SLF1	1.158e-24	44.44	SMC5-SMC6 complex localization factor protein 1 OS...	[more]

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TCONS_00045607 (transcript) - C. hemisphaerica