TCONS_00045593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045593
Unique NameTCONS_00045593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045593 ID=TCONS_00045593|Name=TCONS_00045593|organism=Clytia hemisphaerica|type=transcript|length=1747bp
GCAGTGTTTCTTGAAAAGTTTTCTAAAATCCTTTTAATCCTAGTGCTAGT
GTTCTAGTGCTGACCCCTGGTTGAATTTGTCATAGAAATGAATATGTTGC
AAAAAACTGTTCTCAAATTTgagtgtcaaaagttatgatgaaAGGTagaa
acaatttaaaaaatatgaaagtaTGTTTACTGTCCTTCTAAGACAACAAG
TCTGATAATATTTGCATCTAAAAATCGAAATTaagtttatttacaaaatt
gcAATATTCCTACTAACAAACTTCGAAATGTAAAATATTGTGAGAAATTA
TACCATCCACAATCCACATACCATATATTGATGATGAAAGATGACCCATT
GACAAACGGATCcaacttaaaaaattaaaactgttTTTAGGTTGAATTTC
AAGCTCTGTTTCCAGGGGCTGCGGCTCCACTTTGAAATTGATAGCAAGAA
CTGAAACTGACGAAGGaagccccaccatggttggcgcctacgggcgaaaa
tttttgaattttaggctTTCTAGATCgcttaaaaaaagtttattttaacg
ttatcaaacaaaatttggcttgattagtaaattttcttttactttgaaaa
aagtgGTTGAGCCAAGGTTCGACTTGCTCCCCCAGCACCGCGGCGGCGCC
TGGTTTCACTTTTAAATTCTTCCGAGGGAAAAAACTATGGATGGAATATA
AACAATGATTATATATTATCattattgagatttttcaagttgttcCGATC
AATAGAATGCATATAAAACAacgaaaataaataaaaatggtagattgtaa
tttgtgaaaaataaaaacaactgaACTAGACATCtaccataaaaaaaatt
aaattacgaATTTCCAGAGATTGCCGAAGCTGTATCAAGCCCATTTATAT
TATTAACACAAGTTGGACAAGTACTCAGTTAAGAATCTACAAAACTTAGA
TAGCTATGTGTGATTTTTCCCACTGAAACCTTAAAATTACCTCAGGGCCC
ACTGAGAAACGCTCAAATGTGAGTTGAGCTTTTTTTCGATCCTTCGATTA
ATAATTTGATAACCACGTTCACAATATACAACTAATAAGTTTAAAAATCA
TCTTTTCATGGCTTCATTCATTTGATCAGTGAGCCATTCTACACCTTCTG
GTAGTCCTTCACCGGTCAATGCATTACTGGCACAAATATGCCACGGTTTA
TCTCTCATTTCATCCAACTTCAAAAGATTCGATATTTGAACAGGTGTCAA
AGCATTACGTATGTCCATTTTATTAGCGAAAAACAAGACAGGAATACGTC
TCGATTTGATCATAGGGTGTTGTATCAGCATATCGAATTCTTCTTTGGCG
ACTACTATTCTCAAGTTATCACTGCTATCAATCACAAATATAATGGCCTG
TGCATCTTGGAAATAATGCTCCCATAGATTTCGATATCTGCCTTGGCCAG
ACATGTCAAACACAGTGAAATTTAAACCATTTGCCATGACTTTTTCAACG
GTGAACCCAACTGTGGGTACAATATCAGTTGATTGAGCTTTCTCTGGTTT
CAGTTTATTAATGATGGTTGTTTTACCGGAGTTATCAAGCCCAAGACAAA
TAatatttgcttcttttttcttaCTACCGAACATTGATgataatttatca
aaaatgcccattttttctttctttttttacttgcCTATAAAAGTAGACAA
AATAAGAATCATAATCTGCAACCTCAATCAGTTAATGGCTATTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00045593-protein

>TCONS_00045593-protein ID=TCONS_00045593-protein|Name=TCONS_00045593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MGIFDKLSSMFGSKKKEANIICLGLDNSGKTTIINKLKPEKAQSTDIVPT
VGFTVEKVMANGLNFTVFDMSGQGRYRNLWEHYFQDAQAIIFVIDSSDNL
RIVVAKEEFDMLIQHPMIKSRRIPVLFFANKMDIRNALTPVQISNLLKLD
EMRDKPWHICASNALTGEGLPEGVEWLTDQMNEAMKR
Run BLAST on NCBI

transcript from alignment at scaffold_1:304177..305923

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045593 ID=TCONS_00045593|Name=TCONS_00045593|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at scaffold_1:304177..305923 (Clytia hemisphaerica)
TTCAAATAGCCATTAACTGATTGAGGTTGCAGATTATGATTCTTATTTTG
TCTACTTTTATAGgcaagtaaaaaaagaaagaaaaaatgggcatttttga
taaattatcATCAATGTTCGGTAGtaagaaaaaagaagcaaatatTATTT
GTCTTGGGCTTGATAACTCCGGTAAAACAACCATCATTAATAAACTGAAA
CCAGAGAAAGCTCAATCAACTGATATTGTACCCACAGTTGGGTTCACCGT
TGAAAAAGTCATGGCAAATGGTTTAAATTTCACTGTGTTTGACATGTCTG
GCCAAGGCAGATATCGAAATCTATGGGAGCATTATTTCCAAGATGCACAG
GCCATTATATTTGTGATTGATAGCAGTGATAACTTGAGAATAGTAGTCGC
CAAAGAAGAATTCGATATGCTGATACAACACCCTATGATCAAATCGAGAC
GTATTCCTGTCTTGTTTTTCGCTAATAAAATGGACATACGTAATGCTTTG
ACACCTGTTCAAATATCGAATCTTTTGAAGTTGGATGAAATGAGAGATAA
ACCGTGGCATATTTGTGCCAGTAATGCATTGACCGGTGAAGGACTACCAG
AAGGTGTAGAATGGCTCACTGATCAAATGAATGAAGCCATGAAAAGATGA
TTTTTAAACTTATTAGTTGTATATTGTGAACGTGGTTATCAAATTATTAA
TCGAAGGATCGAAAAAAAGCTCAACTCACATTTGAGCGTTTCTCAGTGGG
CCCTGAGGTAATTTTAAGGTTTCAGTGGGAAAAATCACACATAGCTATCT
AAGTTTTGTAGATTCTTAACTGAGTACTTGTCCAACTTGTGTTAATAATA
TAAATGGGCTTGATACAGCTTCGGCAATCTCTGGAAATtcgtaatttaat
tttttttatggtaGATGTCTAGTtcagttgtttttatttttcacaaatta
caatctaccatttttatttattttcgtTGTTTTATATGCATTCTATTGAT
CGgaacaacttgaaaaatctcaataatGATAATATATAATCATTGTTTAT
ATTCCATCCATAGTTTTTTCCCTCGGAAGAATTTAAAAGTGAAACCAGGC
GCCGCCGCGGTGCTGGGGGAGCAAGTCGAACCTTGGCTCAACcacttttt
tcaaagtaaaagaaaatttactaatcaagccaaattttgtttgataacgt
taaaataaactttttttaagcGATCTAGAAagcctaaaattcaaaaattt
tcgcccgtaggcgccaaccatggtggggcttCCTTCGTCAGTTTCAGTTC
TTGCTATCAATTTCAAAGTGGAGCCGCAGCCCCTGGAAACAGAGCTTGAA
ATTCAACCTAAAaacagttttaattttttaagttgGATCCGTTTGTCAAT
GGGTCATCTTTCATCATCAATATATGGTATGTGGATTGTGGATGGTATAA
TTTCTCACAATATTTTACATTTCGAAGTTTGTTAGTAGGAATATTgcaat
tttgtaaataaacttAATTTCGATTTTTAGATGCAAATATTATCAGACTT
GTTGTCTTAGAAGGACAGTAAACAtactttcatattttttaaattgtttc
tACCTttcatcataacttttgacactcAAATTTGAGAACAGTTTTTTGCA
ACATATTCATTTCTATGACAAATTCAACCAGGGGTCAGCACTAGAACACT
AGCACTAGGATTAAAAGGATTTTAGAAAACTTTTCAAGAAACACTGC

Coding sequence (CDS) from alignment at scaffold_1:304177..305923

>TCONS_00045593 ID=TCONS_00045593|Name=TCONS_00045593|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_1:304177..305923 (Clytia hemisphaerica)
atgggcatttttgataaattatcATCAATGTTCGGTAGtaagaaaaaaga
agcaaatatTATTTGTCTTGGGCTTGATAACTCCGGTAAAACAACCATCA
TTAATAAACTGAAACCAGAGAAAGCTCAATCAACTGATATTGTACCCACA
GTTGGGTTCACCGTTGAAAAAGTCATGGCAAATGGTTTAAATTTCACTGT
GTTTGACATGTCTGGCCAAGGCAGATATCGAAATCTATGGGAGCATTATT
TCCAAGATGCACAGGCCATTATATTTGTGATTGATAGCAGTGATAACTTG
AGAATAGTAGTCGCCAAAGAAGAATTCGATATGCTGATACAACACCCTAT
GATCAAATCGAGACGTATTCCTGTCTTGTTTTTCGCTAATAAAATGGACA
TACGTAATGCTTTGACACCTGTTCAAATATCGAATCTTTTGAAGTTGGAT
GAAATGAGAGATAAACCGTGGCATATTTGTGCCAGTAATGCATTGACCGG
TGAAGGACTACCAGAAGGTGTAGAATGGCTCACTGATCAAATGAATGAAG
CCATGAAAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029154XLOC_029154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045593-proteinTCONS_00045593-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045593-exon-scaffold_1-1491911889:304177..305923TCONS_00045593-exon-scaffold_1-1491911889:304177..305923Clytia hemisphaericaexon
TCONS_00045593-exon-scaffold_1-1510915933:304177..305923TCONS_00045593-exon-scaffold_1-1510915933:304177..305923Clytia hemisphaericaexon
TCONS_00045593-exon-scaffold_1-1575043694:304177..305923TCONS_00045593-exon-scaffold_1-1575043694:304177..305923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:304177..305923 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.4684	38.5329	76.7874	86.2142	19.0379	14.3803	15.3029	15.9923	12.7905	13.1224	12.0591	10.1702	5.18541	4.28577	5.55375	5.86163	7.08251	6.40739	4.34025	5.41419	6.91391	6.88614	21.1589	21.3045	17.2375	16.2903	18.5985	15.933	16.8724	17.8946
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00045593 vs. Swiss-Prot (Human)
Match: ARL6 (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 4.371e-90
Identity = 124/181 (68.51%), Postives = 156/181 (86.19%), Query Frame = -3 
Query: 1119 MGIFDKLSSMFGSKKKEANIICLGLDNSGKTTIINKLKPEKAQSTDIVPTVGFTVEKVMANGLNFTVFDMSGQGRYRNLWEHYFQDAQAIIFVIDSSDNLRIVVAKEEFDMLIQHPMIKSRRIPVLFFANKMDIRNALTPVQISNLLKLDEMRDKPWHICASNALTGEGLPEGVEWLTDQM 1661
            MG+ D+LS + G KKKE +++CLGLDNSGKTTIINKLKP  AQS +I+PT+GF++EK  ++ L+FTVFDMSGQGRYRNLWEHY+++ QAIIFVIDSSD LR+VVAKEE D L+ HP IK RRIP+LFFANKMD+R+A+T V++S LL L+ ++DKPWHICAS+A+ GEGL EGV+WL DQ+
Sbjct:    1 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
The following BLAST results are available for this feature:
BLAST of TCONS_00045593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL64.371e-9068.51ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
back to top