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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045580 ID=TCONS_00045580|Name=TCONS_00045580|organism=Clytia hemisphaerica|type=transcript|length=1649bpRun BLAST on NCBI transcript from alignment at scaffold_1:147382..157148- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045580 ID=TCONS_00045580|Name=TCONS_00045580|organism=Clytia hemisphaerica|type=transcript|length=9767bp|location=Sequence derived from alignment at scaffold_1:147382..157148- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045580 vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2) HSP 1 Score: 338.961 bits (868), Expect = 7.197e-106 Identity = 210/532 (39.47%), Postives = 295/532 (55.45%), Query Frame = 1
Query: 133 CGSCFRANGDCAFCKDEDFSSSGVRLD-RCNYANVLKELGC--KSLMNVQGEHKFEKEENFTF-------------FRQVSPQKITLNLRPAQTNKFKIKVKPAKGFPVDLYYLMDMSKSMENDLNELNKLGIKIADEIGEITPKYRLAFGSFVDKTVAPFIQ--PAQLNKPCMLEDNVTPCKPTFGYNHIFDFNDNKTSFQERINQQNISGNLDTPEGGFDALMQVASCNSTLNWEPVDRAHRIVIFVTDATPHIAGDGKLGGIIQPNDGLCHLQTSTNDQSTKEYTQSNKQDYPXXXXXXXXXXXNDIIPIFAVTENVQSVYKKIVDEWKDM--NARIGVLKGDSSNIVELIRKTYSEIITTIRLSDNSPSD-IKVFYKADESCPNVI----EEGAGCSNITAGDEYGFDVMVTATNCPKGVAQVPTQSFVINIPGLGKIDVDVNLQCECPCEAPGMGVQNSTLCN-GTGTFQCGICYCGSGYHGEKCECDNE---AEADDTLCIPNNTTDVVCSGAGSCVCGECVCNKR 1641
CG C +A +C +C + F G+ RC+ LK+ GC + N +G +K +N T Q+ PQ++ L LR + F +K K A+ +P+DLYYLMD+S SM++DL + LG + +E+ IT +R+ FGSFV+KTV P+I PA+L PC E N C F Y ++ + F E + +Q ISGNLD+PEGGFDA+MQVA C S + W V R+++F TDA H AGDGKLGGI+ PNDG CHL+ + YT S+ DYPSI+ L KL N+I IFAVTE Q VYK E K++ + +G L +SSN+++LI Y+ + + + L + S+ + + YK+ C N + E G CSNI+ GDE F++ +T+ CPK + SF I G + +V+V LQ C CE G+ S C+ G GTF+CG C C G G CEC + +E D C N+++ +CS G CVCG+CVC KR
Sbjct: 35 CGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQN---CTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVT---RLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNM-------YTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYK----ELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKS--YCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPKK----DSDSFKIRPLGFTE-EVEVILQYICECECQSEGIPESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE-ICSNNGECVCGQCVCRKR 541 The following BLAST results are available for this feature:
BLAST of TCONS_00045580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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