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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045565 ID=TCONS_00045565|Name=TCONS_00045565|organism=Clytia hemisphaerica|type=transcript|length=2629bpRun BLAST on NCBI transcript from alignment at scaffold_1:109267..125084+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045565 ID=TCONS_00045565|Name=TCONS_00045565|organism=Clytia hemisphaerica|type=transcript|length=15818bp|location=Sequence derived from alignment at scaffold_1:109267..125084+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045565 vs. Swiss-Prot (Human)
Match: GARS (Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3) HSP 1 Score: 850.507 bits (2196), Expect = 0.000e+0 Identity = 398/679 (58.62%), Postives = 514/679 (75.70%), Query Frame = 3
Query: 351 DIAELEQQVKNCRISVKEQGDLVKKLKGEKALTADIDIAVKELKARKRVLEQKELQLDPPDNF-DRGKCEDLLKRRFFYAPAFEIYGGVAGLYDFGPMGCAMENNLVKIWRNHFVLEEQLLEVRCTQMTPQQVLKSSGHVDRFTDVMVRDVKTGDCYRADHLLEGHLEKLCLSKKTSGEKKKEYQLVMNKMETYKREELWELIQKYECKAPVTNNDLCDPQDFNLMFATSIGPSGLIPGFLRPETAQGIFLNFKRLLDYNNGRLPFGGAQIGCGFRNEIAPRAGLLRVREFLMAEIEYFVDPDKKEMSKFSTVENTTCRIYSRDAQMSGEPAVMMSLKDAHSKGIINNTAVGYFLGRICEFMLKIGVDPKKMRFRQHMANEMAHYACDCWDCELKTSYGWIECIGCADRACFDLQQHTNASGEKLVAMVDLAEPVSMDVVEVVLNKPIVGKAFKKEAKVVTEHVSKLNDEQTAQLESDINSNGSHTFTIDGKEYQLTKEMLKEVRRFKKDVHVREVQPHVIEPSFGIGRIMYSVLEHNFKVREGDEQRTWLSLPPLLAPVKCSVLPLSKNEAFDPFIKQISTALTEYDISHKVDDSSGSIGRRYARTDEIAIPYGVTIDFDTVNNTPHTATLRERNTTRQIRAELDDIPDLVNQLIRGKKSWQNVEQHYGLFEGQTTNK 2384
D A E+ + R++V++QGDLV+KLK +KA D+D AV ELKARKRVLE KEL L P D+ DR K ED LKRRFFY AF IYGGV+GLYDFGP+GCA++NN+++ WR HF+ EEQ+LE+ CT +TP+ VLK+SGHVD+F D MV+DVK G+C+RADHLL+ HL+KL KK S EKK E + V+ +++ Y ++EL +L Y K+P+T NDL P FNLMF T IGP G +PG+LRPETAQGIFLNFKRLL++N G+LPF AQIG FRNEI+PR+GL+RVREF MAEIE+FVDP +K+ KF V + +YS AQ+SG+ A M L DA +G+INNT +GYF+GRI ++ K+G+ P K+RFRQHM NEMAHYACDCWD E KTSYGWIE +GCADR+C+DL H A+ LVA L EP +++VV+ +K +GKA+KK+AK+V E+++ ++ ++E +N G T +GK +QLTK+M+ V+RF+K ++V EV P+VIEPSFG+GRIMY+V EH F VREGDEQRT+ S P ++AP KCSVLPLS+N+ F PF+K++S ALT + +SHKVDDSSGSIGRRYARTDEI + +GVTIDFDTVN TPHTATLR+R++ RQIRAE+ ++P +V L G +W +VE Y LFEGQ T K
Sbjct: 56 DGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMIN-VKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETGK 733 The following BLAST results are available for this feature:
BLAST of TCONS_00045565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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