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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045559 ID=TCONS_00045559|Name=TCONS_00045559|organism=Clytia hemisphaerica|type=transcript|length=877bp
AAATAGAGATGGACCTGATACATTATTCCCTTCACTTACTCAAAACAGAC
GCACATAGCCAGTTAGAAGGTTCAATCATCGTTTACACTCACTACAAGAA
ACCATAAAAACCACAAAATACCAACCTACAATGAACTCATTCACTAAGAC
AATCTTTTGCTGTGCAATTCTCGTCTTTTCAACGGCAAATACAGCACCTG
TTACCAATAGTAACACAGAAAACAATAATAATGACATACCAATCGAAATT
GTTGACAAAACTGGTTTTGCAAGTGGAACAAATGACATCAAAATTGAGGG
TTATGACTTTGAAGGACAAGAGAAAGATATTGAAGGGCAAACCTGCAGAC
GCGTCAAGACCTCGAAATATTTGGTAGATAAGAAGAAAGGATGCAAGAGT
ATTCGCAGGGTTGAAATCGCTGTTTGTAGAGGCATTAACCAAACAAccaa
tcaacaatcaaatcaagatcATTTCGAccaatcatcatcatcatcatcat
catcacaaAATGGTAGCCTAGATGTGGTAAATGCTAATCCTTCTCGAAAA
TTCGAATGTCAAGCATCTAAAGCACGAAAGCAGAACGTCGACTTTTTGTG
TCGAGGAggtgaaataaaaactttttacattcgaatagTAACATTGTGCC
GGTTCAAAGGAGTTTACAGCAATAATAATCACTACCCACGTGTATGAGCA
GAAACTgtaccaaaaaaacaaaacctttgacCAGGtcaaatcaaatttct
tttaacaTTGACTGTATATGGAAACAGATATTTTAACGTGAAACTTTTTA
CTTgtcaaaagaaaatattatttattgCTAAAACACAGGTCTTTAGTCCT
GTTTTTTATGACGAAACGAAATATATT Run BLAST on NCBI protein sequence of TCONS_00045559-protein >TCONS_00045559-protein ID=TCONS_00045559-protein|Name=TCONS_00045559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MNSFTKTIFCCAILVFSTANTAPVTNSNTENNNNDIPIEIVDKTGFASGT
NDIKIEGYDFEGQEKDIEGQTCRRVKTSKYLVDKKKGCKSIRRVEIAVCR
GINQTTNQQSNQDHFDQSSSSSSSSQNGSLDVVNANPSRKFECQASKARK
QNVDFLCRGGEIKTFYIRIVTLCRFKGVYSNNNHYPRV Run BLAST on NCBI transcript from alignment at scaffold_1:79608..82008+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045559 ID=TCONS_00045559|Name=TCONS_00045559|organism=Clytia hemisphaerica|type=transcript|length=2401bp|location=Sequence derived from alignment at scaffold_1:79608..82008+ (Clytia hemisphaerica)
AAATAGAGATGGACCTGATACATTATTCCCTTCACTTACTCAAAACAGAC
GCACATAGCCAGTTAGAAGGTTCAATCATCGTTTACACTCACTACAAGGT
AAGTTAAAGATTAAATTATGTAATGGAACTTCTTTCATTCAAAATATACA
CCACTACAATAACTTGGAATTGTGAGTCTTTTCTGGCTTTTTCTATCAAA
TACATTAAAGCCAATCAGCTGTAGTAAaagtgatgtaatgtcagaaagCA
TTACAAGGGGGAGTATACCTTTAATACATTTGGATTCTGGGTTAGAGTTA
TAAGTGATGGTGTTAAATATCTGAATTCAACGACATTctcatacacccct
gtctcactaacccggtggagcttttttcttcattggggataaaaatctct
tttgaaattccaatggggataggaattcttttgttccaaggttaagaaat
ccagtggggatggttttggagtgcaatttgaatttgaattgaatttcaAA
CACAGGGGTGTCTCATAGACACAGAATATTGACTTTTAATTTTTCCTGGT
AAACTTTAACCCAGCCTCCTCATGCTTCAAGGGTCAATATCCCAACTACT
GGCACACaccgttgtttcaacgtttatttaacgctCACTACGTCTatata
atgttagatgaacgttggaacaacgttttgtgccagctgggaggtGTATC
TCACCACCAACAAAACTGCAAAGAGGTGTTACTTCTCTACTTATGGCAAT
CTTAGAGGTGAATTCGTTTTCTTttactttcaacaaattttgaaaaacct
atctatctattttttttgtttaaatttcagAAACCATAAAAACCACAAAA
TACCAACCTACAATGAACTCATTCACTAAGACAATCTTTTGCTGTGCAAT
TCTCGTCTTTTCAACGGCAAATACAGCACCTGTTACCAATAGTAACACAG
AAAACAATAATAATGACATACCAATCGAAATTGTTGACAAAACTGGTTTT
GCAAGTGGAACAAATGACATCAAAATTGAGGGTTATGACTTTGAAGGACA
AGAGAAAGGTAGGATGAGGTTTAATTTCTAACATTCTTTGTATTAGTTCT
CTTATTAAGCAACTTGACAAACTTTTGCACTTGTTTCCAATACTCGCTAT
AGGGTTCATTGTCCTACAAGCATTTGAAcccttttttgactttaaagaat
ataatACTAGCATTAACATTAGCATCAACTAGAATTGAATTGAAACATCA
TTTTGGCGTAGCTAAGATTCAAGCTCTTTAGAAGAtctgatatttttttt
acaaactgGAACTTTTAAACCCTTATAGTAGGAATCGTGACATCTTTTAT
ACGACGCAACCAAACCTGGtcaattcaaaaaatgaagtttttaaaGAGTT
TCTTGCGATGGGGGTTTCCGCTAAGGCCTAGGAAACTGACGTCACAGACA
ATAAACCCCTTGACCCCAAAAATAAAACTCAATAAAACTCAAAACCACTT
ACTAAttaaaagctctcaaaaatctatatagaggacttttaagtggatat
aGTCGATTTCCCAATGGAACTCGAGTAAATCAACCGGGAATGGCGTCAAA
ACGCAACTTTGACATTGATTTTCTCGAGATAGGTATTAAAAGGGTGCATA
ACTATAATAGAGACTCCTTCTGACATTTAGCTTCGGACATttagctttaa
aaaaaaacggaaAACACTAGGTCACAGATATTGTGTTATATTAGATCAAT
ATCAAAGACATGTGTCGCTCAAGGAAGGGTGTACTATTTCAGAATTATCA
AGATCGTCTCAAAGAAAATTCCTGAAAACAATCACTGTCTTTCATTTAAG
ATATTGAAGGGCAAACCTGCAGACGCGTCAAGACCTCGAAATATTTGGTA
GATAAGAAGAAAGGATGCAAGAGTATTCGCAGGGTTGAAATCGCTGTTTG
TAGAGGCATTAACCAAACAAccaatcaacaatcaaatcaagatcATTTCG
AccaatcatcatcatcatcatcatcatcacaaAATGGTAGCCTAGATGTG
GTAAATGCTAATCCTTCTCGAAAATTCGAATGTCAAGCATCTAAAGCACG
AAAGCAGAACGTCGACTTTTTGTGTCGAGGAggtgaaataaaaacttttt
acattcgaatagTAACATTGTGCCGGTTCAAAGGAGTTTACAGCAATAAT
AATCACTACCCACGTGTATGAGCAGAAACTgtaccaaaaaaacaaaacct
ttgacCAGGtcaaatcaaatttcttttaacaTTGACTGTATATGGAAACA
GATATTTTAACGTGAAACTTTTTACTTgtcaaaagaaaatattatttatt
gCTAAAACACAGGTCTTTAGTCCTGTTTTTTATGACGAAACGAAATATAT
T Coding sequence (CDS) from alignment at scaffold_1:79608..82008+ >TCONS_00045559 ID=TCONS_00045559|Name=TCONS_00045559|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_1:79608..82008+ (Clytia hemisphaerica)
ATGAACTCATTCACTAAGACAATCTTTTGCTGTGCAATTCTCGTCTTTTC
AACGGCAAATACAGCACCTGTTACCAATAGTAACACAGAAAACAATAATA
ATGACATACCAATCGAAATTGTTGACAAAACTGGTTTTGCAAGTGGAACA
AATGACATCAAAATTGAGGGTTATGACTTTGAAGGACAAGAGAAAGATAT
TGAAGGGCAAACCTGCAGACGCGTCAAGACCTCGAAATATTTGGTAGATA
AGAAGAAAGGATGCAAGAGTATTCGCAGGGTTGAAATCGCTGTTTGTAGA
GGCATTAACCAAACAAccaatcaacaatcaaatcaagatcATTTCGAcca
atcatcatcatcatcatcatcatcacaaAATGGTAGCCTAGATGTGGTAA
ATGCTAATCCTTCTCGAAAATTCGAATGTCAAGCATCTAAAGCACGAAAG
CAGAACGTCGACTTTTTGTGTCGAGGAggtgaaataaaaactttttacat
tcgaatagTAACATTGTGCCGGTTCAAAGGAGTTTACAGCAATAATAATC
ACTACCCACGTGTATGAATGAACTCATTCACTAAGACAATCTTTTGCTGT
GCAATTCTCGTCTTTTCAACGGCAAATACAGCACCTGTTACCAATAGTAA
CACAGAAAACAATAATAATGACATACCAATCGAAATTGTTGACAAAACTG
GTTTTGCAAGTGGAACAAATGACATCAAAATTGAGGGTTATGACTTTGAA
GGACAAGAGAAAGATATTGAAGGGCAAACCTGCAGACGCGTCAAGACCTC
GAAATATTTGGTAGATAAGAAGAAAGGATGCAAGAGTATTCGCAGGGTTG
AAATCGCTGTTTGTAGAGGCATTAACCAAACAAccaatcaacaatcaaat
caagatcATTTCGAccaatcatcatcatcatcatcatcatcacaaAATGG
TAGCCTAGATGTGGTAAATGCTAATCCTTCTCGAAAATTCGAATGTCAAG
CATCTAAAGCACGAAAGCAGAACGTCGACTTTTTGTGTCGAGGAggtgaa
ataaaaactttttacattcgaatagTAACATTGTGCCGGTTCAAAGGAGT
TTACAGCAATAATAATCACTACCCACGTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045559-exon-scaffold_1-1491911889:79608..79705 | TCONS_00045559-exon-scaffold_1-1491911889:79608..79705 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1510915933:79608..79705 | TCONS_00045559-exon-scaffold_1-1510915933:79608..79705 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1575043694:79608..79705 | TCONS_00045559-exon-scaffold_1-1575043694:79608..79705 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1491911889:80438..80665 | TCONS_00045559-exon-scaffold_1-1491911889:80438..80665 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1510915933:80438..80665 | TCONS_00045559-exon-scaffold_1-1510915933:80438..80665 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1575043694:80438..80665 | TCONS_00045559-exon-scaffold_1-1575043694:80438..80665 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1491911889:81458..82008 | TCONS_00045559-exon-scaffold_1-1491911889:81458..82008 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1510915933:81458..82008 | TCONS_00045559-exon-scaffold_1-1510915933:81458..82008 | Clytia hemisphaerica | exon |
| TCONS_00045559-exon-scaffold_1-1575043694:81458..82008 | TCONS_00045559-exon-scaffold_1-1575043694:81458..82008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:79608..82008 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008835 | Sclerostin/SOSTDC1 |
| IPR029034 | Cystine-knot_cytokine |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005615 | extracellular space |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005615 |
extracellular space |
Blast
The following BLAST results are available for this feature:
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