TCONS_00045557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045557
Unique NameTCONS_00045557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2002

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045557 ID=TCONS_00045557|Name=TCONS_00045557|organism=Clytia hemisphaerica|type=transcript|length=2002bp
TTTACATTACCATGGACCAGTTGGGAGTCTCAAGAACATCCACGTGGTCC
AACACAAAACATTGGAGAGTGGTTTGAATAGAACTTCAGACGAGCATCAC
AAGAAAATCGTTGTTCACGATAAGGTTTTGTACGCACGTCAAGAACAAAT
TCTAAACAGGAAGAAAAGAGGTTATATAAGATCTGACCCTGATTATAAAA
AACAATGGTTCTTGAAAAATACAGGACAAACAAGACATTTATGTAATGGT
GAATTGTACGATATTAATGTTGAACCGGTCTGGAGAGAAGGAATTACTGG
TAGAGGCGTTGTGGTGGCCATCTTGGATGACGGTTTAGAATATACTCATC
CTGATTTGAAACGAAATTTCAACAATGTTAGTAGCTTTAATTTCAATTCA
AGACCGTATTCGAGGGATCCGATTCCAAGAGCAACACCAGATGATTTGAA
CAAACACGGCACAAGGTNGGGACCCGATTCCAAGAGAAACACCAGATGAT
TTGAACAAACACGGCACAAGGTGTGCAGGCGAAGTGGCTGCAGAGAGAGA
TAATGGTGTATGTGGGCGTGGCGTGGCTTACAACGCCCAAGTTGCCGGTA
TCCGAATGTTGGACGGAGAGGTCAGTGATGCGATAGAGGCTGGCTCGTTG
TCTTATAGACGTGACTTGATTGATATTTATAGCAGTTCGTGGGGCCCTGA
TGATGATGGATACACGGTGGACGGACCTGGAAGGTTGACAAGAAGAGCTC
TTTCTGAAGGTATTTCAAAGGGTCGAAATGGACTTGGATCCATCTTTGTG
TGGGCCACAGGAAACGGCGGTGGCTTATTCGATTATTGTTCTTGCGATGG
CTACATCAACTCACCTTATACCATTTCGATTGGCGCTGTCAACAATTGCG
GGCATAAACCGTGGTATTCAGAGCCATGTCCGGGAACGCTGGCCGTGACT
TTTAGCAGTGGTGAAACATCCCGTGAACGCCGTGATTTACAGATTGTGAC
GACAGATTTGCACAAAAAATGCACAGACTTGCATACTGGAACATCAGCAG
CCGCTCCTCTGGCAGCCGgaATATTTGCTTTAGTTTTGGAAGCCAATCCA
AAGTTAACTTGGAGAGATTTACAACATTTGATTGTTCACACGTCAAGAAA
AGTTCATCCTTCTGATTCAGGATGGAAAGAGAATGGTGCTGGTCTAAttg
ttaatgaaaatttcgggtTTGGTTCTTTAGATGCAAAAGCTTTGGTAGAT
GCAGCCCGTGACCCTAACTGGAAAACAGCAGACACACGGAAGGTTTACGA
AACGCCAGTCAAATATGTGGGGTTACATCGCGTACCAAGATCACAAAGTG
AAATTATCAGTAAAATTCCCTTCAGCCAAAGTACAAATGGTGTTTGTATA
AATAAACTCGAACATGTTCACGCTATTGTATCGTTGAGATTATCAAAACA
AGGTTACCGTGGCAACCGTGGAAAACATTCGATCAAGTTGATTTCACCTC
AAGGAACAGAATCAAACCTTTTATTACAAAGACCAAGAGACTATTTTCAT
GGTAGAGGAAGACATTATGCTTTCCGTGAATGGGAATTTATGACTGTTTT
CAATTGGGATGAGAACCCCGAAGGTATTTGGACTTTAAAGATGAAAGACC
ATACACCTTATTCTTACTCATCATGGGCAGAAAAAACTCATTTATCTTGG
AAACTGAGACTTTCTGGAACATGTAAacaaataaaatggccatattggaa
CTTTTTTGATAGCCATGGTCATAAATAAGTTTAAAACATGCAGTTTACAT
TTTTGAATCGTTGGAAATGTAACTACAAGTATTTGAAGTCGAGTCTTCGC
TTGGCAGATGGAAAGTGACTATGTAATCCTATCCTATCCTGCCTACAACG
GCTGGGTTTTGTGATTCCGATTGTTTCTATGGGAACATCATTTGGAGAAG
AAATAAACTTGTAAAAGACTGTATCACTATATACTCCCAGAATCATTCAT
GA
Run BLAST on NCBI

transcript from alignment at scaffold_1:51396..62540+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045557 ID=TCONS_00045557|Name=TCONS_00045557|organism=Clytia hemisphaerica|type=transcript|length=11145bp|location=Sequence derived from alignment at scaffold_1:51396..62540+ (Clytia hemisphaerica)
TTTACATTACCATGGACCAGTTGGGAGTCTCAAGAACATCCACGTGGTCC
AACACAAAACATTGGAGAGTGGTTTGAATAGAACTTCAGACGAGCATCAC
AAGAAAATCGTTGTTCACGATAAGGTTTTGTACGCACGTCAAGAACAAAT
TCTAAACAGGAAGAAAAGAGGTTATATAAGATCTGACCCTGATTATAAAA
AACAATGGTTCTTGAAAAATACAGGTTAGTGCGCCTCTGAAAGAAGAAAC
ATTCAACCTtagggagcggtcataaagtatctactagaggggggtggagg
atattttgaaaaatccaaaaaataaggcccaatattttttcgcacCCCCC
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aatatttttcaccaccattttagctaaaaagacactttgttttgacaaat
ttcttttaagaattactttttcaaaccactctgatgagctgtgagagcca
ctaatctacttccctcaCTATGGAGCGGTATCCGTGTCAAAAACATCCAG
TTTAGATAACGGTCGGAGGTTTGTAACtgattgggtcggtttgaaaggtg
attgggtcggtttgaaANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tcggtttaaaaGACGATCgggtcggtttgaaaggtgattgggtcggttta
aaaGGTGATCGGGTCGGTTTAAAAGGTGATCGGGTTGGTTTTAAAGGTGA
TCAGGTCGGTTTAACAAGTGATTGAGTGAGTTTAGTTTTCTACTCAGTTT
TAAGATCAATCGGAAGGAGTGCCGGTTTAAGTCGCcggttttttttggat
tttcccGAGAATCGGATTACTCAATCCTCTAAGTCTGGTCTGGAGAATGT
CACATTTCACTTTTCTTTTAGAaatcttttccaaaatttctcTTTTACTA
TTTTCCAGGCTGTACATCAAATCTACAGACCAGatttacaaaaatccgaa
aaatcgTAATCCGATTGCCCGAAAAATCCGGCACTGTAAACTGGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTT
TCAAACCGACCCGATTGTCTTTTAAACCGACCCGATCACTATgtaaaccg
acccaatcacctttcaaaTCGACCCAATCAGTTACAAACCTCCGACCGTT
ATCTAAACTGGATGTTTTTGACACGGATACCGCTCCATACTCACCTAGCT
CAATGttacaaaccaaaagggcaaggcgatgatgcccaaataatggCAAT
ATGAAATGTACATATATCCAATAAGATAAATTATTAGATGTCGGNNNNNN
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aatggaattccacggttttgatagttattttgtaaatttgttataTACCg
aaattccggactttcttgaaagcaatttggtacggaaattccatgtcgtc
cattgggggggggcatggcatggaccaggggtttaggtaccccctaagaa
aataggtaccccctaagaaaataggtaccccctaagaaaataggtacccc
ctgatttttaggtaccccctgtgattggtaccccctgtgacttgagtata
tgccaagaaatgaaaaaattgtatatttttacaattaaaaagaataatga
tagttagataaaggcaagataaaatatagttcccaagcccccagacctta
ctgcataaaagttagatacccCCAGAGATCAAAGGTACCCTCTGGAATTC
AAAAGCCCCCCCCCTGCGGGCTGGGGGGGGGTCATGCCATGCCCCCATCA
TATGTTTTCAAGATTTCAGGCTTGAATggttttaaaatgttctaaatatT
GGGATCTTTTGCTTAAATTGAGCATTGTATTTATGTATTTTAATCTGAAG
TTCgtattgttcttaatttgttcttattttttggttaaaatttagcctcg
ttttccaaaaaatgggttttataaaaaaagggaTATACTTTCACCTTGTA
ATGATCAAAGTTTTGTTGTGGTTTTTGATTTTAGGACAAACAAGACATTT
ATGTAATGGTGAATTGTACGATATTAATGTTGAACCGGTCTGGAGAGAAG
GAATTACTGGTAGAGGCGTTGTGGTGGCCATCTTGGATGACGGTTTAGAA
TATACTCATCCTGATTTGAAACGAAATTTCAACAATGTTAGTAGCTTTAA
TTTCAATTCAAGACCGTATTCGAGGGATCCGATTCCAAGAGCAACACCAG
ATGATTTGAACAAACACGGCACAAGGTNGGGACCCGATTCCAAGAGAAAC
ACCAGATGATTTGAACAAACACGGCACAAGGTAATACCATGTTACGTCTG
CGATATATtcggcttttccagaaaaaaaatttacccccactgttgaggat
attgatttttcgaagtatcaaaccccctggatatcctactttattagtga
AGACCCCCTGGATGTCCACTctcaaaaatatgctcaacccccctggatat
cctcttttataaagatgcttacgcCTGGATATTGtactttttacttgaaa
agacactttaccccctggatatctgctcccttgtagatatttaacccccc
tggatattcacttttgaacaaaaatcattAACCCCTGGTTATCCGacatc
ctcaacaggggggggcacggactatttctggaaaagcccatttttttAAG
CTATATTTAGCGAATTCGAACGGTTTTCTTTCTCTTCCCTATAAGTGATT
TACCGTGTAAAACAGCCTAAAcgaaaatcattgtaaaggaagtttatttt
aaaggttttatttttacaaaagtgttcccatttcatatcagccACATATT
TCGTATTAGGACGgcgtctccctattgttatcttgtgctgaataaacaaa
aaattgtttttcttttcctctttctgaccaatcttgctccacatccgtgt
caattcaatgtgaaaaggcttgtaaattaaaattgatgagtaagcaaacg
atatcacttcaatttaaaaacaaaacctttaactgtGTAGGTTAttagtt
tttcagataattatCCATTCCCATTTTAGGTGTGCAGGCGAAGTGGCTGC
AGAGAGAGATAATGGTGTATGTGGGCGTGGCGTGGCTTACAACGCCCAAG
TTGCCGGTATCCGAATGTTGGACGGAGAGGTCAGTGATGCGATAGAGGCT
GGCTCGTTGTCTTATAGACGTGACTTGATTGATATTTATAGCAGTTCGTG
GGGCCCTGATGATGATGGATACACGGTGGACGGACCTGGAAGGTTGACAA
GAAGAGCTCTTTCTGAAGGTACGTCTCTATTCATCTTTGATAGAAAAGAA
GTTGATTCCTATTTTTGCATCCTCTTTTCTGAACTAAAATTCTTCAATGA
ACTTTACTTAAGTATATAGAGGTTTGCTGACAAATAGTTTGACTGAGTAG
AAATCAGCTCTATGACTTTTTGTGATTCTTTTGTTCAAGGTATTTCAAAG
GGTCGAAATGGACTTGGATCCATCTTTGTGTGGGCCACAGGAAACGGCGG
TGGCTTATTCGATTATTGTTCTTGCGATGGCTACATCAACTCACCTTATA
CCATTTCGATTGGCGCTGTCAACAATTGCGGGCATAAACCGTGGTATTCA
GAGCCATGTCCGGGAACGCTGGCCGTGACTTTTAGCAGTGGTGAAACATC
CCGTGAACGCCGTGATTTACAGATTGTGACGACAGATTTGCACAAAAAAT
GCACAGACTTGCATACTGGAACATCAGCAGCCGCTCCTCTGGCAGCCGGT
TAGTATTTTACaataagttttttataagaacaatcctataagaaaaaaag
ggattgaaattgaaaacaaataaagaacGACATGATGCAGATCCCACACT
TCAGATATTCTTAAGAAAGTTTCGATTTGATAGTTGATGTTGCGTAAATG
AACAACGTAAGGTTTAAGATTTCATACAGTTATAAATAGccgtaccagag
tgtatctcacgtttatcgtttcgtaATACACtatgtgcgcattgtctgtt
tgataaaagaatCCCCGTAGGGGAACCTGTGATGAAATATGATTTacaaa
tagcaacacttctccaCCCGCACTCCATCGCGGTTTGAAAAGTGTcaaat
cagagaaaaaaaacaatgacaacagaccctctacgacaatgaattttgaa
attaggtgtagatatcgggtctgtgtacagactaaAAGAGTCGATGCTGA
GCCTAAATTTACTGGTTAAGAGAAGTGTGTTCCGGACCTTCCACTCTGTT
GTTTACGGAAAACATTTACTAATAGGGGCAATCTTTAACGTTTTCTGATA
CGATTCCATCAGTTGTAAGGAGAACGGATAACGTTTCTTAAGCGAGGTAG
TTTCATAAGATTTGCAGTAGTTTCGAAGTAGTttcaaaattccttttttt
ttctattttaggaATATTTGCTTTAGTTTTGGAAGCCAATCCAAAGTTAA
CTTGGAGAGATTTACAACATTTGATTGTTCACACGTCAAGAAAAGTTCAT
CCTTCTGATTCAGGATGGAAAGAGAATGGTGCTGGTCTAAttgttaatga
aaatttcgggtTTGGTTCTTTAGATGCAAAAGCTTTGGTAGATGCAGCCC
GTGACCCTAACTGGAAAACAGCAGACACACGGAAGGTTTACGAAACGCCA
GTCAAATATGTGGGGTTACATCGCGTACCAAGATCACAAAGTGAAATTAT
CAGTAAAATTCCCTTCAGCCAAAGTACAAATGGTGTTTGTATAAATAAAC
TCGAACATGTTCACGCTATTGTATCGTTGAGATTATCAAAACAAGGTTAC
CGTGGCAACCGTGGAAAACATTCGATCAAGTTGATTTCACCTCAAGGAAC
AGAATCAAACCTTTTATTACAAAGACCAAGAGACTATTTTCATGGTAGAG
GAAGACATTATGCTTTCCGTGAATGGGAATTTATGACTGTTTTCAATTGG
GATGAGAACCCCGAAGGTATTTGGACTTTAAAGATGAAAGACCATACACC
TTATTCTTACTCATCATGGGCAGAAAAAACTCATTTATCTTGGAAACTGA
GACTTTCTGGAACATGTAAacaaataaaatggccatattggaaCTTTTTT
GATAGCCATGGTCATAAATAAGTTTAAAACATGCAGTTTACATTTTTGAA
TCGTTGGAAATGTAACTACAAGTATTTGAAGTCGAGTCTTCGCTTGGCAG
ATGGAAAGTGACTATGTAATCCTATCCTATCCTGCCTACAACGGCTGGGT
TTTGTGATTCCGATTGTTTCTATGGGAACATCATTTGGAGAAGAAATAAA
CTTGTAAAAGACTGTATCACTATATACTCCCAGAATCATTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029131XLOC_029131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045557-exon-scaffold_1-1491911889:51396..51619TCONS_00045557-exon-scaffold_1-1491911889:51396..51619Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1510915933:51396..51619TCONS_00045557-exon-scaffold_1-1510915933:51396..51619Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1575043694:51396..51619TCONS_00045557-exon-scaffold_1-1575043694:51396..51619Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1491911889:59180..59475TCONS_00045557-exon-scaffold_1-1491911889:59180..59475Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1510915933:59180..59475TCONS_00045557-exon-scaffold_1-1510915933:59180..59475Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1575043694:59180..59475TCONS_00045557-exon-scaffold_1-1575043694:59180..59475Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1491911889:60225..60463TCONS_00045557-exon-scaffold_1-1491911889:60225..60463Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1510915933:60225..60463TCONS_00045557-exon-scaffold_1-1510915933:60225..60463Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1575043694:60225..60463TCONS_00045557-exon-scaffold_1-1575043694:60225..60463Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1491911889:60635..60943TCONS_00045557-exon-scaffold_1-1491911889:60635..60943Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1510915933:60635..60943TCONS_00045557-exon-scaffold_1-1510915933:60635..60943Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1575043694:60635..60943TCONS_00045557-exon-scaffold_1-1575043694:60635..60943Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1491911889:61607..62540TCONS_00045557-exon-scaffold_1-1491911889:61607..62540Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1510915933:61607..62540TCONS_00045557-exon-scaffold_1-1510915933:61607..62540Clytia hemisphaericaexon
TCONS_00045557-exon-scaffold_1-1575043694:61607..62540TCONS_00045557-exon-scaffold_1-1575043694:61607..62540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:51396..62540 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.250422	1.5746	0	0.0025666	0	0	0	0	0	0	0	0	0	0	0.808156	0	0	0	0	1.04092	0	0.0293628	0.800882	0	0	0	0.384691	0.351454	0.0133633	0.000716344
Blast
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BLAST of TCONS_00045557 vs. Swiss-Prot (Human)
Match: NEC1 (Neuroendocrine convertase 1 OS=Homo sapiens GN=PCSK1 PE=1 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 1.960e-111
Identity = 209/424 (49.29%), Postives = 269/424 (63.44%), Query Frame = 3 
Query:  471 DPIPRETPDDLNKHGTRCAGEVAAERDNGVCGRGVAYNAQVAGIRMLDGEVSDAIEAGSLSYRRDLIDIYSSSWGPDDDGYTVDGPGRLTRRALSEGISKGRNGLGSIFVWATGNGGGLFDYCSCDGYINSPYTISIGAVNNCGHKPWYSEPCPGTLAVTFSSGETSRERRDLQIVTTDLHKKCTDLHTGTSXXXXXXXXXXXLVLEANPKLTWRDLQHLIVHTSR-KVHPSDSGWKENGAGLIVNENFGFGSLDAKALVDAARDPNWKTADTRKVYETPVKYVGLH-RVPRSQSEIISKIPFSQSTNGV--CINKLEHVHAIVSLRLSKQGYRGNRGKHSIKLISPQGTESNLLLQRPRDYFHGRGRHYAFREWEFMTVFNWDENPEGIWTLKMKDHTPYSYSSWAEKTHLSWKLRLSGTCKQ 1730
            DP PR  P + NKHGTRCAGE+A + +N  CG GVAYN++V GIRMLDG V+DAIEA S+ +    +DIYS+SWGP+DDG TV+GPGRL ++A   G+ +GR G GSIFVWA+GNGG   D C CDGY +S YTISI + +  G  PWY+E C  TLA ++SSG+ + +R    I + DLH  CT+ HTGTSA+APLAAGIFAL LEANP LTWRD+QHL+V TS      ++ GWK+NGAGL+VN  FGFG L+AKALVD A    W++   +K  E  VK      R  ++  E+I +IP +++  G    I  LEHV    ++  S+      RG   + L S  GT + LL +R RD          F+ W+FM+V  W ENP G WTL++ D    S     E   ++WKL L GT  Q
Sbjct:  195 DPFPRYDPTNENKHGTRCAGEIAMQANNHKCGVGVAYNSKVGGIRMLDGIVTDAIEASSIGFNPGHVDIYSASWGPNDDGKTVEGPGRLAQKAFEYGVKQGRQGKGSIFVWASGNGGRQGDNCDCDGYTDSIYTISISSASQQGLSPWYAEKCSSTLATSYSSGDYTDQR----ITSADLHNDCTETHTGTSASAPLAAGIFALALEANPNLTWRDMQHLVVWTSEYDPLANNPGWKKNGAGLMVNSRFGFGLLNAKALVDLADPRTWRSVPEKK--ECVVKDNDFEPRALKANGEVIIEIP-TRACEGQENAIKSLEHVQFEATIEYSR------RGDLHVTLTSAAGTSTVLLAERERDTSPN-----GFKNWDFMSVHTWGENPIGTWTLRITD---MSGRIQNEGRIVNWKLILHGTSSQ 597

HSP 2 Score: 93.2041 bits (230), Expect = 1.440e-19
Identity = 60/158 (37.97%), Postives = 96/158 (60.76%), Query Frame = 2 
Query:   14 GPVGSLKNIHVVQHKTLESGLNRTSDEHHKKIVVHDKVLYARQEQILNRKKRGYIR-------SDPDYKKQWFLKNTGQTRHLCNGELYDINVEPVWREGITGRGVVVAILDDGLEYTHPDLKRXXXXXXXXXXXXRPYSRDPIPRATPDDLNKHGTR 466
            G +GSL+N ++ +HK       R++    K++   D+V++A Q+    R KR  +R       +DP + +QW+L++T  T  L      D++V PVW++GITG+GVV+ +LDDGLE+ H D+  N++  +S++FN   +  DP PR  P + NKHGTR
Sbjct:   59 GQIGSLENHYLFKHKNHPRRSRRSAFHITKRLSDDDRVIWAEQQYEKERSKRSALRDSALNLFNDPMWNQQWYLQDTRMTAALPK---LDLHVIPVWQKGITGKGVVITVLDDGLEWNHTDIYANYDPEASYDFNDNDH--DPFPRYDPTNENKHGTR 211
The following BLAST results are available for this feature:
BLAST of TCONS_00045557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEC11.960e-11149.29Neuroendocrine convertase 1 OS=Homo sapiens GN=PCS... [more]
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