TCONS_00045538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045538
Unique NameTCONS_00045538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045538 ID=TCONS_00045538|Name=TCONS_00045538|organism=Clytia hemisphaerica|type=transcript|length=495bp
TGGAACATCAATTGAACCCtatcaaacatcaatcgaacttcatGGAACAA
AGAACAGTCATCTAACTAATtcgaacttatcaagaaatttttgtaaagtt
caatagctgttcgatcgggttcggtaatcgaacagttaTCGTTTGATTAT
GTTCAATAAAGTTTGATGGTTAGATTAcgaaaatttcaatcaaatttcaC
ATCTTTTTTTGATTGGGTTCGATTACCGTTCGATTGATTTGGTTGATCGA
ACGTTGATCGAAGCTGATTGAATGCTAATCGAAGCTCGTTGAAGCCAATT
GAAGCTTGTCGAAGCCAATCGAAACCAATCAAGTTTCACATGTTTTTAGG
ATTCAATTAGaattcgattgatagttgattGATTTGGCTAATCGAATTCC
AGTCATTCGATTGgatttgattaaatttgatttatccgattggttcgatt
ggcaATCGAACGTTGATTGACATCCCCTGCATGCCCTGCCCTGGT
Run BLAST on NCBI

transcript from alignment at sc0008225:6..500

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045538 ID=TCONS_00045538|Name=TCONS_00045538|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0008225:6..500 (Clytia hemisphaerica)
ACCAGGGCAGGGCATGCAGGGGATGTCAATCAACGTTCGATtgccaatcg
aaccaatcggataaatcaaatttaatcaaatcCAATCGAATGACTGGAAT
TCGATTAGCCAAATCaatcaactatcaatcgaattCTAATTGAATCCTAA
AAACATGTGAAACTTGATTGGTTTCGATTGGCTTCGACAAGCTTCAATTG
GCTTCAACGAGCTTCGATTAGCATTCAATCAGCTTCGATCAACGTTCGAT
CAACCAAATCAATCGAACGGTAATCGAACCCAATCAAAAAAAGATGtgaa
atttgattgaaattttcgTAATCTAACCATCAAACTTTATTGAACATAAT
CAAACGAtaactgttcgattaccgaacccgatcgaacagctattgaactt
tacaaaaatttcttgataagttcgaATTAGTTAGATGACTGTTCTTTGTT
CCatgaagttcgattgatgtttgataGGGTTCAATTGATGTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029115XLOC_029115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045538-exon-sc0008225-1491911889:6..500TCONS_00045538-exon-sc0008225-1491911889:6..500Clytia hemisphaericaexon
TCONS_00045538-exon-sc0008225-1510915933:6..500TCONS_00045538-exon-sc0008225-1510915933:6..500Clytia hemisphaericaexon
TCONS_00045538-exon-sc0008225-1575043694:6..500TCONS_00045538-exon-sc0008225-1575043694:6..500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008225supercontigsc0008225:6..500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62024	0	0.421361	0.137412	0.334571	0	0.159483	0.149306	0.104533	0.129481	0.125677	0.247846	0.247501	0.171355	0.140877	0.0755914	0	0.0954475	0.395597	0	0.239873	0.351006	0	0.129309	0	0.356593	0.170094	0	0	0.280556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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