TCONS_00045533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045533
Unique NameTCONS_00045533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045533 ID=TCONS_00045533|Name=TCONS_00045533|organism=Clytia hemisphaerica|type=transcript|length=432bp
AcagaaaagaaaagtaaaattcaTGACCTTCTCACCGTCAAAAGGCAACT
CACTCCCTGCTTAAAAGAGATAAATTCTAGATATCCAATTTTAGTTTCGG
TCGGAAGGTAGTATGAACATAAAGATTGAGAATTTGTCTTACTCTACGAC
AAAGATCTGCAAAGTCTTGACTGTGATTTAGGTAATACTCTACCTGCTTG
AAATCGTTAAGCCGTGTGCTCATCAACTTTTAAAAGGTCTTAAAGGCTAT
TTAAATGCGGTTTTAAAATTACTATTTAAAGCTTCAAACTTTTCTATATT
CAGAAGCAGATTAATTTTCGATGGAGGGCTGTTTGGGTGTATATTATTCC
AATATTTTGCTTATTCTTTGGAGAAAAATTCTCTTATTTAGTACGGTTAA
CAACGCGTACTTATGCTGCGCACTTCCCCGAA
Run BLAST on NCBI

transcript from alignment at sc0008205:105..536

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045533 ID=TCONS_00045533|Name=TCONS_00045533|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0008205:105..536 (Clytia hemisphaerica)
TTCGGGGAAGTGCGCAGCATAAGTACGCGTTGTTAACCGTACTAAATAAG
AGAATTTTTCTCCAAAGAATAAGCAAAATATTGGAATAATATACACCCAA
ACAGCCCTCCATCGAAAATTAATCTGCTTCTGAATATAGAAAAGTTTGAA
GCTTTAAATAGTAATTTTAAAACCGCATTTAAATAGCCTTTAAGACCTTT
TAAAAGTTGATGAGCACACGGCTTAACGATTTCAAGCAGGTAGAGTATTA
CCTAAATCACAGTCAAGACTTTGCAGATCTTTGTCGTAGAGTAAGACAAA
TTCTCAATCTTTATGTTCATACTACCTTCCGACCGAAACTAAAATTGGAT
ATCTAGAATTTATCTCTTTTAAGCAGGGAGTGAGTTGCCTTTTGACGGTG
AGAAGGTCAtgaattttacttttcttttctgT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029110XLOC_029110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045533-exon-sc0008205-1491911889:105..536TCONS_00045533-exon-sc0008205-1491911889:105..536Clytia hemisphaericaexon
TCONS_00045533-exon-sc0008205-1510915933:105..536TCONS_00045533-exon-sc0008205-1510915933:105..536Clytia hemisphaericaexon
TCONS_00045533-exon-sc0008205-1575043694:105..536TCONS_00045533-exon-sc0008205-1575043694:105..536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008205supercontigsc0008205:105..536 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.318186	0	0.180133	0.176232	0	0	0	0	0	0	0.322365	0	0.423231	0.43953	0	0.0969468	0.836014	0.367237	0	0.176971	0.46146	0.225084	0.364826	0.663359	0.341622	0.762224	0.436296	0.232814	2.47213	1.79908
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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