TCONS_00045525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045525
Unique NameTCONS_00045525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045525 ID=TCONS_00045525|Name=TCONS_00045525|organism=Clytia hemisphaerica|type=transcript|length=551bp
caaaaatgtataataacAGTATACTTCCAGGTTTACAACTTGgtgatttt
ttactttgaaGGACATAAACGCTAGCTCAGAAGAGGACTCGAGGTTTGTT
TATATCAGGGGAAATCCCGTTCTATTcgattgttaaaaaaattccatgac
ACAACATTCGAAAAGTAGAATAATTGGGCTTTCCAAATATATATAACACT
TGGGGTATTTCCCTTAAACAAAGTGGTGATTTTTGAGCAAGCAAAGAACG
CATAATTTATATGCTACGTCAGTTTCCTGGGAAATAAGATAANCAAAGAA
CGCATAATTTATATGCTACGTCAGTTTCCTGGGAAATAAGATAAACAAAT
AGATTcgaacgtcaaaaagttttcgtgaaaaagtttttttcaaaagtgca
AGGAAAACACTCGAGCAATATTCGCTGTTTAGAAACTCTTTTGTAATGTC
TTTTGACAATTCTCTCAAATACATACCGTCTTCCAACAAAAATGACTCAA
AAGATATGCTGGAAATGACGGGGGAGTTGGTCGTTTATGTGGGCAAAATG
G
Run BLAST on NCBI

transcript from alignment at sc0008188:7..557

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045525 ID=TCONS_00045525|Name=TCONS_00045525|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0008188:7..557 (Clytia hemisphaerica)
CCATTTTGCCCACATAAACGACCAACTCCCCCGTCATTTCCAGCATATCT
TTTGAGTCATTTTTGTTGGAAGACGGTATGTATTTGAGAGAATTGTCAAA
AGACATTACAAAAGAGTTTCTAAACAGCGAATATTGCTCGAGTGTTTTCC
TtgcacttttgaaaaaaactttttcacgaaaactttttgacgttcgAATC
TATTTGTTTATCTTATTTCCCAGGAAACTGACGTAGCATATAAATTATGC
GTTCTTTGNTTATCTTATTTCCCAGGAAACTGACGTAGCATATAAATTAT
GCGTTCTTTGCTTGCTCAAAAATCACCACTTTGTTTAAGGGAAATACCCC
AAGTGTTATATATATTTGGAAAGCCCAATTATTCTACTTTTCGAATGTTG
TgtcatggaatttttttaacaatcgAATAGAACGGGATTTCCCCTGATAT
AAACAAACCTCGAGTCCTCTTCTGAGCTAGCGTTTATGTCCttcaaagta
aaaaatcacCAAGTTGTAAACCTGGAAGTATACTgttattatacattttt
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029102XLOC_029102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045525-exon-sc0008188-1491911889:7..557TCONS_00045525-exon-sc0008188-1491911889:7..557Clytia hemisphaericaexon
TCONS_00045525-exon-sc0008188-1510915933:7..557TCONS_00045525-exon-sc0008188-1510915933:7..557Clytia hemisphaericaexon
TCONS_00045525-exon-sc0008188-1575043694:7..557TCONS_00045525-exon-sc0008188-1575043694:7..557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008188supercontigsc0008188:7..557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311208	0.101159	0.352366	0.114912	1.39894	0.221092	1.20032	1.99774	0.874164	0.324838	1.47138	1.24358	0.275966	0.573188	0.353429	0.82178	0.856617	0.399093	0.661643	0.230787	0.902681	1.90795	0.951534	1.18949	1.55928	2.18683	0.284486	0	0.115139	0.117308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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