TCONS_00045523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045523
Unique NameTCONS_00045523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045523 ID=TCONS_00045523|Name=TCONS_00045523|organism=Clytia hemisphaerica|type=transcript|length=549bp
CTTTAACTTCCAATTCTTCTCTACATATAATACCGACTGAAGTTCCATAA
GCCCATGTTTGATTTCCAGCTTGTATTCTCTTGTCATCATCTGCACTTAG
CGCTACTTTCCGCACAGACTGTGTATAAACTCGATGCTTTTCACTAACAA
ACCGCTGCTGCGTTCTATACTGGATATCTCCTGTCTCTAATACTTGCTTG
TAGTCCTTAAACTCAATTTGCTTCTTAACCACACACTTCTTGGTTCCTTT
GCACTTCTTGTCAACTCCTCCGTCGAGCTTTTCATAAGCGTACATCTTCG
GCCTCAGGGCAATAAACTCTGTCATGATCTTACCACCCAGCTCGTCCTTC
ATCTTGCCTATGATCTTTTTATTCAGCCCAATGGGCAGCGGGCGATACTT
GACGTCGCTCTCATCTTTGGGCTTCGGATAGTTGCTCGTATCAAACCTGG
CCTCTACATCGTCCGCGATGTCCCCGTAAAAGTCTTTGGTCTTAATGTGG
TAAACCAGTGAGTCGGTGTCCATATACATTAGCTTAGCTGCTCCACCAT
Run BLAST on NCBI

protein sequence of TCONS_00045523-protein

>TCONS_00045523-protein ID=TCONS_00045523-protein|Name=TCONS_00045523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
GGAAKLMYMDTDSLVYHIKTKDFYGDIADDVEARFDTSNYPKPKDESDVK
YRPLPIGLNKKIIGKMKDELGGKIMTEFIALRPKMYAYEKLDGGVDKKCK
GTKKCVVKKQIEFKDYKQVLETGDIQYRTQQRFVSEKHRVYTQSVRKVAL
SADDDKRIQAGNQTWAYGTSVGIICREELEVK
Run BLAST on NCBI

transcript from alignment at sc0008184:2..550

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045523 ID=TCONS_00045523|Name=TCONS_00045523|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at sc0008184:2..550 (Clytia hemisphaerica)
ATGGTGGAGCAGCTAAGCTAATGTATATGGACACCGACTCACTGGTTTAC
CACATTAAGACCAAAGACTTTTACGGGGACATCGCGGACGATGTAGAGGC
CAGGTTTGATACGAGCAACTATCCGAAGCCCAAAGATGAGAGCGACGTCA
AGTATCGCCCGCTGCCCATTGGGCTGAATAAAAAGATCATAGGCAAGATG
AAGGACGAGCTGGGTGGTAAGATCATGACAGAGTTTATTGCCCTGAGGCC
GAAGATGTACGCTTATGAAAAGCTCGACGGAGGAGTTGACAAGAAGTGCA
AAGGAACCAAGAAGTGTGTGGTTAAGAAGCAAATTGAGTTTAAGGACTAC
AAGCAAGTATTAGAGACAGGAGATATCCAGTATAGAACGCAGCAGCGGTT
TGTTAGTGAAAAGCATCGAGTTTATACACAGTCTGTGCGGAAAGTAGCGC
TAAGTGCAGATGATGACAAGAGAATACAAGCTGGAAATCAAACATGGGCT
TATGGAACTTCAGTCGGTATTATATGTAGAGAAGAATTGGAAGTTAAAG

Coding sequence (CDS) from alignment at sc0008184:2..550

>TCONS_00045523 ID=TCONS_00045523|Name=TCONS_00045523|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0008184:2..550 (Clytia hemisphaerica)
GGTGGAGCAGCTAAGCTAATGTATATGGACACCGACTCACTGGTTTACCA
CATTAAGACCAAAGACTTTTACGGGGACATCGCGGACGATGTAGAGGCCA
GGTTTGATACGAGCAACTATCCGAAGCCCAAAGATGAGAGCGACGTCAAG
TATCGCCCGCTGCCCATTGGGCTGAATAAAAAGATCATAGGCAAGATGAA
GGACGAGCTGGGTGGTAAGATCATGACAGAGTTTATTGCCCTGAGGCCGA
AGATGTACGCTTATGAAAAGCTCGACGGAGGAGTTGACAAGAAGTGCAAA
GGAACCAAGAAGTGTGTGGTTAAGAAGCAAATTGAGTTTAAGGACTACAA
GCAAGTATTAGAGACAGGAGATATCCAGTATAGAACGCAGCAGCGGTTTG
TTAGTGAAAAGCATCGAGTTTATACACAGTCTGTGCGGAAAGTAGCGCTA
AGTGCAGATGATGACAAGAGAATACAAGCTGGAAATCAAACATGGGCTTA
TGGAACTTCAGTCGGTATTATATGTAGAGAAGAATTGGAAGTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029100XLOC_029100Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045523-proteinTCONS_00045523-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045523-exon-sc0008184-1491911889:2..550TCONS_00045523-exon-sc0008184-1491911889:2..550Clytia hemisphaericaexon
TCONS_00045523-exon-sc0008184-1510915933:2..550TCONS_00045523-exon-sc0008184-1510915933:2..550Clytia hemisphaericaexon
TCONS_00045523-exon-sc0008184-1575043694:2..550TCONS_00045523-exon-sc0008184-1575043694:2..550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008184supercontigsc0008184:2..550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0693974	0.28828	0	0.0635857	0	0.160576	0.110922	0.348217	0.403552	0	0	0	0.112032	0	0.286159	0.458095	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023211DNA_pol_palm_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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