TCONS_00045521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045521
Unique NameTCONS_00045521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045521 ID=TCONS_00045521|Name=TCONS_00045521|organism=Clytia hemisphaerica|type=transcript|length=404bp
AACATGGCAAGTAGAACGGGTTCTATGACATCCAATTCAACTTCAACCAC
TCTAAACAAAGAGTCTTTCGAAAAACTATGGCACAACTACAAGATGAATC
CCTTCGACGCTGAAATCACGCCAACCATGGATAAAAACCGACTGGTCAGC
TTGGGACCTGTGGTAGCACTAATGGCATCCGGCTCACCAGAATTTTTCAT
GCACAATGTCACAACTCTATTGTGGACATTGAATCCGAACTTAAACACCC
AAACTTTCATCGGTCCTCAAGAGATCAAGGAAAAACTTGCAGCAAACCGA
TGTACAGCAACATTATCAAAACCTGGTCAATTGGAAATGGTCGCTTTGAT
GATTGAAGGTTACAAGAAACATATGAGTGACCCCAACTCAAAGCTTAACA
GTga
Run BLAST on NCBI

protein sequence of TCONS_00045521-protein

>TCONS_00045521-protein ID=TCONS_00045521-protein|Name=TCONS_00045521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
NMASRTGSMTSNSTSTTLNKESFEKLWHNYKMNPFDAEITPTMDKNRLVS
LGPVVALMASGSPEFFMHNVTTLLWTLNPNLNTQTFIGPQEIKEKLAANR
CTATLSKPGQLEMVALMIEGYKKHMSDPNSKLNS
Run BLAST on NCBI

transcript from alignment at sc0008178:29..432

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045521 ID=TCONS_00045521|Name=TCONS_00045521|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0008178:29..432 (Clytia hemisphaerica)
tcACTGTTAAGCTTTGAGTTGGGGTCACTCATATGTTTCTTGTAACCTTC
AATCATCAAAGCGACCATTTCCAATTGACCAGGTTTTGATAATGTTGCTG
TACATCGGTTTGCTGCAAGTTTTTCCTTGATCTCTTGAGGACCGATGAAA
GTTTGGGTGTTTAAGTTCGGATTCAATGTCCACAATAGAGTTGTGACATT
GTGCATGAAAAATTCTGGTGAGCCGGATGCCATTAGTGCTACCACAGGTC
CCAAGCTGACCAGTCGGTTTTTATCCATGGTTGGCGTGATTTCAGCGTCG
AAGGGATTCATCTTGTAGTTGTGCCATAGTTTTTCGAAAGACTCTTTGTT
TAGAGTGGTTGAAGTTGAATTGGATGTCATAGAACCCGTTCTACTTGCCA
TGTT

Coding sequence (CDS) from alignment at sc0008178:29..432

>TCONS_00045521 ID=TCONS_00045521|Name=TCONS_00045521|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0008178:29..432 (Clytia hemisphaerica)
ACTGTTAAGCTTTGAGTTGGGGTCACTCATATGTTTCTTGTAACCTTCAA
TCATCAAAGCGACCATTTCCAATTGACCAGGTTTTGATAATGTTGCTGTA
CATCGGTTTGCTGCAAGTTTTTCCTTGATCTCTTGAGGACCGATGAAAGT
TTGGGTGTTTAAGTTCGGATTCAATGTCCACAATAGAGTTGTGACATTGT
GCATGAAAAATTCTGGTGAGCCGGATGCCATTAGTGCTACCACAGGTCCC
AAGCTGACCAGTCGGTTTTTATCCATGGTTGGCGTGATTTCAGCGTCGAA
GGGATTCATCTTGTAGTTGTGCCATAGTTTTTCGAAAGACTCTTTGTTTA
GAGTGGTTGAAGTTGAATTGGATGTCATAGAACCCGTTCTACTTGCCATG
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029098XLOC_029098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045521-exon-sc0008178-1491911889:29..432TCONS_00045521-exon-sc0008178-1491911889:29..432Clytia hemisphaericaexon
TCONS_00045521-exon-sc0008178-1510915933:29..432TCONS_00045521-exon-sc0008178-1510915933:29..432Clytia hemisphaericaexon
TCONS_00045521-exon-sc0008178-1575043694:29..432TCONS_00045521-exon-sc0008178-1575043694:29..432Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045521-proteinTCONS_00045521-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008178supercontigsc0008178:29..432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545811	0.709669	0.205999	0.403075	2.94423	2.71433	0.467818	0.218983	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.625817	0.189653	0	0	0	0	0	0.205741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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