TCONS_00045520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045520
Unique NameTCONS_00045520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045520 ID=TCONS_00045520|Name=TCONS_00045520|organism=Clytia hemisphaerica|type=transcript|length=334bp
ctttaaaatgttattaaaatgCTTACTTTATTCACTTAATCACAGGAATT
CACTTTATTGACTTAGAGGGGTCttgaaatcagcatttttaagcCATTTC
TAATCTAAAATATAGGATTGTtttgttcttagatttttgcTACACcttct
attcttataaaatgcaTGTAAGTACATAGCTCAAATTTATGCTAAAGTTA
AAGTGCTTAATTCGCTTTTAGAAGAGTCACAAGATCCTTTTGAATCCATG
ACGCAAAGCCTGACGGAGCAATACGGAGTGAAAGGTAATATTGGCATATT
TGCACTCTATTCTTGCTGAGAATATTGGTGTCTG
Run BLAST on NCBI

transcript from alignment at sc0008177:93..426

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045520 ID=TCONS_00045520|Name=TCONS_00045520|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0008177:93..426 (Clytia hemisphaerica)
CAGACACCAATATTCTCAGCAAGAATAGAGTGCAAATATGCCAATATTAC
CTTTCACTCCGTATTGCTCCGTCAGGCTTTGCGTCATGGATTCAAAAGGA
TCTTGTGACTCTTCTAAAAGCGAATTAAGCACTTTAACTTTAGCATAAAT
TTGAGCTATGTACTTACAtgcattttataagaatagaagGTGTAgcaaaa
atctaagaacaaaACAATCCTATATTTTAGATTAGAAATGgcttaaaaat
gctgatttcaaGACCCCTCTAAGTCAATAAAGTGAATTCCTGTGATTAAG
TGAATAAAGTAAGcattttaataacattttaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029097XLOC_029097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045520-exon-sc0008177-1491911889:93..426TCONS_00045520-exon-sc0008177-1491911889:93..426Clytia hemisphaericaexon
TCONS_00045520-exon-sc0008177-1510915933:93..426TCONS_00045520-exon-sc0008177-1510915933:93..426Clytia hemisphaericaexon
TCONS_00045520-exon-sc0008177-1575043694:93..426TCONS_00045520-exon-sc0008177-1575043694:93..426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008177supercontigsc0008177:93..426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13527	0.830299	0.321352	0	5.3584	3.02449	2.18935	3.75768	0.478334	2.07373	2.30036	1.13412	0.377516	0.784107	0.644643	0.6918	1.49142	0.21838	0	0	1.64646	0.803087	0.325419	0.591706	0.914165	0.815871	0	0	0.315015	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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