TCONS_00045517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045517
Unique NameTCONS_00045517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045517 ID=TCONS_00045517|Name=TCONS_00045517|organism=Clytia hemisphaerica|type=transcript|length=547bp
ctgatactcagggtagtcaATATGTACAAAGTTGCGTAGGAGCGGGCTTC
TGAGCATAGGCACGAAGTAAAGCTGCTTTCGGAAAGTGAGCAACTCACTC
CTATCCAGGATGAAAACCTTGCGTTCTCTTGATAGGTGCTATATGATGTT
TTCGCAAGGAAACCTTAAGATTGCGGCTCAGTCCGCTACCTACTTCCTAC
CCTAAACAATACAATCACAATGCAATCAAAATAATGCAACGTATAACATA
AATCATACAAAAAATTCGTTAAAATTCTTCACTAAAACATGGGTTGAACT
TTGTGTCTTTAGTATATACACGAAGCCGTTTATAAAAGTGACGAGAAGTT
GAAATCGAGTTTGAAAAGCAATAGTCCTGGAGTGTTTTTTAACGTCGTTG
GATTGTACAATGCGTCTATTTCGAAAAAGGAGCAGCGTATTATCAACAAG
TTAAACGCAACATAACACATTCATTCCAATCATCTTTAGATTTGACGCCA
CACACCCATAAATAACATAGGTAATAGATTTGAGAATTTGACTGAAG
Run BLAST on NCBI

transcript from alignment at sc0008163:9..555

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045517 ID=TCONS_00045517|Name=TCONS_00045517|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0008163:9..555 (Clytia hemisphaerica)
CTTCAGTCAAATTCTCAAATCTATTACCTATGTTATTTATGGGTGTGTGG
CGTCAAATCTAAAGATGATTGGAATGAATGTGTTATGTTGCGTTTAACTT
GTTGATAATACGCTGCTCCTTTTTCGAAATAGACGCATTGTACAATCCAA
CGACGTTAAAAAACACTCCAGGACTATTGCTTTTCAAACTCGATTTCAAC
TTCTCGTCACTTTTATAAACGGCTTCGTGTATATACTAAAGACACAAAGT
TCAACCCATGTTTTAGTGAAGAATTTTAACGAATTTTTTGTATGATTTAT
GTTATACGTTGCATTATTTTGATTGCATTGTGATTGTATTGTTTAGGGTA
GGAAGTAGGTAGCGGACTGAGCCGCAATCTTAAGGTTTCCTTGCGAAAAC
ATCATATAGCACCTATCAAGAGAACGCAAGGTTTTCATCCTGGATAGGAG
TGAGTTGCTCACTTTCCGAAAGCAGCTTTACTTCGTGCCTATGCTCAGAA
GCCCGCTCCTACGCAACTTTGTACATATtgactaccctgagtatcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029094XLOC_029094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045517-exon-sc0008163-1491911889:9..555TCONS_00045517-exon-sc0008163-1491911889:9..555Clytia hemisphaericaexon
TCONS_00045517-exon-sc0008163-1510915933:9..555TCONS_00045517-exon-sc0008163-1510915933:9..555Clytia hemisphaericaexon
TCONS_00045517-exon-sc0008163-1575043694:9..555TCONS_00045517-exon-sc0008163-1575043694:9..555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008163supercontigsc0008163:9..555 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104964	0	0	0	0	0	0.134947	0	0	0.219121	0.212685	0.209716	0.139616	0.0724964	0.894028	0.447734	0.0787959	1.04992	0.111579	0.116759	0.608909	0.297005	0.240699	0.547075	0	0	0.143926	0.153602	0.233003	0.118697
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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