TCONS_00045515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045515
Unique NameTCONS_00045515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045515 ID=TCONS_00045515|Name=TCONS_00045515|organism=Clytia hemisphaerica|type=transcript|length=586bp
TTTTTTTTTCCACCCCATTGATCACTTAATTCACATCGGATTCTAGAGGT
TTTAATGAAATGTTGTATCTGTGCTAGTTTACCCCAGCTTCTGAAAGCCT
TTGGTGTGATATCAAGTAGCTCACTCCATTCACTTGGGTTTTCATCATGC
TCAATGAAATCTTCCATGCATTGAGCGAAGTAGCTGGAGTTGGCATCAGA
GATTGTTTTGTGTCTACGAAGAGAATTTAGGCAGTGCATCAGACTACCCC
ATTCAACTTCGCCAAGATAGTGAGCCCAAGCAACGTGACCGTATATTTCT
GGACCGTTTAATGCCCGTTGCCAGTCATCCATGCTTGGTGTTGGATTATC
GTTATACTGTTGATTTCTCGCATCATAGTAATTGCGATAATGGTTCTTGA
TGGAAGTTAGTTTGTACATTGGAATTAAACCGAGGTTTCCTTCCACTGTG
ACGATTGGTGTTGTTGATTCTCCAGTTGACGTTGTTTTTGTcgttgtttt
tgattttgatttggaTTTTGATGGGGTTTGAACTGGGACCTCTGGATTAG
AAGTCTGTTGCGCTGCCGATTGCGCCACTGATCCTT
Run BLAST on NCBI

protein sequence of TCONS_00045515-protein

>TCONS_00045515-protein ID=TCONS_00045515-protein|Name=TCONS_00045515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
GSVAQSAAQQTSNPEVPVQTPSKSKSKSKTTTKTTSTGESTTPIVTVEGN
LGLIPMYKLTSIKNHYRNYYDARNQQYNDNPTPSMDDWQRALNGPEIYGH
VAWAHYLGEVEWGSLMHCLNSLRRHKTISDANSSYFAQCMEDFIEHDENP
SEWSELLDITPKAFRSWGKLAQIQHFIKTSRIRCELSDQWGGKK
Run BLAST on NCBI

transcript from alignment at sc0008160:1..586

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045515 ID=TCONS_00045515|Name=TCONS_00045515|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0008160:1..586 (Clytia hemisphaerica)
AAGGATCAGTGGCGCAATCGGCAGCGCAACAGACTTCTAATCCAGAGGTC
CCAGTTCAAACCCCATCAAAAtccaaatcaaaatcaaaaacaacgACAAA
AACAACGTCAACTGGAGAATCAACAACACCAATCGTCACAGTGGAAGGAA
ACCTCGGTTTAATTCCAATGTACAAACTAACTTCCATCAAGAACCATTAT
CGCAATTACTATGATGCGAGAAATCAACAGTATAACGATAATCCAACACC
AAGCATGGATGACTGGCAACGGGCATTAAACGGTCCAGAAATATACGGTC
ACGTTGCTTGGGCTCACTATCTTGGCGAAGTTGAATGGGGTAGTCTGATG
CACTGCCTAAATTCTCTTCGTAGACACAAAACAATCTCTGATGCCAACTC
CAGCTACTTCGCTCAATGCATGGAAGATTTCATTGAGCATGATGAAAACC
CAAGTGAATGGAGTGAGCTACTTGATATCACACCAAAGGCTTTCAGAAGC
TGGGGTAAACTAGCACAGATACAACATTTCATTAAAACCTCTAGAATCCG
ATGTGAATTAAGTGATCAATGGGGTGGAAAAAAAAA

Coding sequence (CDS) from alignment at sc0008160:1..586

>TCONS_00045515 ID=TCONS_00045515|Name=TCONS_00045515|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0008160:1..586 (Clytia hemisphaerica)
GGATCAGTGGCGCAATCGGCAGCGCAACAGACTTCTAATCCAGAGGTCCC
AGTTCAAACCCCATCAAAAtccaaatcaaaatcaaaaacaacgACAAAAA
CAACGTCAACTGGAGAATCAACAACACCAATCGTCACAGTGGAAGGAAAC
CTCGGTTTAATTCCAATGTACAAACTAACTTCCATCAAGAACCATTATCG
CAATTACTATGATGCGAGAAATCAACAGTATAACGATAATCCAACACCAA
GCATGGATGACTGGCAACGGGCATTAAACGGTCCAGAAATATACGGTCAC
GTTGCTTGGGCTCACTATCTTGGCGAAGTTGAATGGGGTAGTCTGATGCA
CTGCCTAAATTCTCTTCGTAGACACAAAACAATCTCTGATGCCAACTCCA
GCTACTTCGCTCAATGCATGGAAGATTTCATTGAGCATGATGAAAACCCA
AGTGAATGGAGTGAGCTACTTGATATCACACCAAAGGCTTTCAGAAGCTG
GGGTAAACTAGCACAGATACAACATTTCATTAAAACCTCTAGAATCCGAT
GTGAATTAAGTGATCAATGGGGTGGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029092XLOC_029092Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045515-proteinTCONS_00045515-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045515-exon-sc0008160-1491911889:1..586TCONS_00045515-exon-sc0008160-1491911889:1..586Clytia hemisphaericaexon
TCONS_00045515-exon-sc0008160-1510915933:1..586TCONS_00045515-exon-sc0008160-1510915933:1..586Clytia hemisphaericaexon
TCONS_00045515-exon-sc0008160-1575043694:1..586TCONS_00045515-exon-sc0008160-1575043694:1..586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008160supercontigsc0008160:1..586 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16442	2.93656	2.55722	2.18911	43.402	38.0073	14.0345	11.3267	2.22042	5.40248	1.52546	1.12813	0	0.129994	0	0	0	0.0724084	0	0	0	0	0.215799	0.490481	0	0	0	0	0.10445	0.425671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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