TCONS_00045513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045513
Unique NameTCONS_00045513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045513 ID=TCONS_00045513|Name=TCONS_00045513|organism=Clytia hemisphaerica|type=transcript|length=572bp
ACTAAAAAAGTCAATATAAAGGTTCACGTGGGAATGCTTACTGGTGAAAT
ATCCGGTCGTTTTTGAGCGAGCAATTCGTGATAACCATGATTGAAATGAT
CCCATAATGCACTGCGAACAATAACTGTCAgcgtgaaaaagaaaattgtc
aaATTTACAGTCTGTCTAGAGTAACGTTTTAATCCATAACCTTCctccaa
tttttcattttcactgcaAGACTCGTCAGCTGAAAGTAAGCGTTCTCCAC
TTTCTGCATCATAATTTCGGTATTTGTTCTtcaattttggtaaaatttct
GGGTTTTTGATAGGGAGATGTTTGTTGAGTCTATAAATTGTTCCAATCAT
AATGAATAATCCACCGATAGTATCAGCCATTCCATCAATCATATATCCAT
AGGTCCCCCATCCAGACAAGTAGTCAGTGCTTTTAGACTTTGCTCTGTAA
ATAACTCCATCTAATGTATCAAGCATGTTTCTGATGAAATAAATAACAGC
TCCTGCACGACGGTGTGAGAAAGACGAACTGGCAATGAGACGACCAGCAA
TTATAGCCAAACTGAAATGTAG
Run BLAST on NCBI

protein sequence of TCONS_00045513-protein

>TCONS_00045513-protein ID=TCONS_00045513-protein|Name=TCONS_00045513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
LHFSLAIIAGRLIASSSFSHRRAGAVIYFIRNMLDTLDGVIYRAKSKSTD
YLSGWGTYGYMIDGMADTIGGLFIMIGTIYRLNKHLPIKNPEILPKLKNK
YRNYDAESGERLLSADESCSENEKLEEGYGLKRYSRQTVNLTIFFFTLTV
IVRSALWDHFNHGYHELLAQKRPDISPVSIPT
Run BLAST on NCBI

transcript from alignment at sc0008155:1..572

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045513 ID=TCONS_00045513|Name=TCONS_00045513|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0008155:1..572 (Clytia hemisphaerica)
CTACATTTCAGTTTGGCTATAATTGCTGGTCGTCTCATTGCCAGTTCGTC
TTTCTCACACCGTCGTGCAGGAGCTGTTATTTATTTCATCAGAAACATGC
TTGATACATTAGATGGAGTTATTTACAGAGCAAAGTCTAAAAGCACTGAC
TACTTGTCTGGATGGGGGACCTATGGATATATGATTGATGGAATGGCTGA
TACTATCGGTGGATTATTCATTATGATTGGAACAATTTATAGACTCAACA
AACATCTCCCTATCAAAAACCCagaaattttaccaaaattgaAGAACAAA
TACCGAAATTATGATGCAGAAAGTGGAGAACGCTTACTTTCAGCTGACGA
GTCTtgcagtgaaaatgaaaaattggagGAAGGTTATGGATTAAAACGTT
ACTCTAGACAGACTGTAAATttgacaattttctttttcacgcTGACAGTT
ATTGTTCGCAGTGCATTATGGGATCATTTCAATCATGGTTATCACGAATT
GCTCGCTCAAAAACGACCGGATATTTCACCAGTAAGCATTCCCACGTGAA
CCTTTATATTGACTTTTTTAGT

Coding sequence (CDS) from alignment at sc0008155:1..572

>TCONS_00045513 ID=TCONS_00045513|Name=TCONS_00045513|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0008155:1..572 (Clytia hemisphaerica)
CTACATTTCAGTTTGGCTATAATTGCTGGTCGTCTCATTGCCAGTTCGTC
TTTCTCACACCGTCGTGCAGGAGCTGTTATTTATTTCATCAGAAACATGC
TTGATACATTAGATGGAGTTATTTACAGAGCAAAGTCTAAAAGCACTGAC
TACTTGTCTGGATGGGGGACCTATGGATATATGATTGATGGAATGGCTGA
TACTATCGGTGGATTATTCATTATGATTGGAACAATTTATAGACTCAACA
AACATCTCCCTATCAAAAACCCagaaattttaccaaaattgaAGAACAAA
TACCGAAATTATGATGCAGAAAGTGGAGAACGCTTACTTTCAGCTGACGA
GTCTtgcagtgaaaatgaaaaattggagGAAGGTTATGGATTAAAACGTT
ACTCTAGACAGACTGTAAATttgacaattttctttttcacgcTGACAGTT
ATTGTTCGCAGTGCATTATGGGATCATTTCAATCATGGTTATCACGAATT
GCTCGCTCAAAAACGACCGGATATTTCACCAGTAAGCATTCCCACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029090XLOC_029090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045513-exon-sc0008155-1491911889:1..572TCONS_00045513-exon-sc0008155-1491911889:1..572Clytia hemisphaericaexon
TCONS_00045513-exon-sc0008155-1510915933:1..572TCONS_00045513-exon-sc0008155-1510915933:1..572Clytia hemisphaericaexon
TCONS_00045513-exon-sc0008155-1575043694:1..572TCONS_00045513-exon-sc0008155-1575043694:1..572Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045513-proteinTCONS_00045513-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008155supercontigsc0008155:1..572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
78.32	84.7268	43.9322	45.8131	253.452	206.948	293.778	300.088	282.08	207.091	268.538	248.856	103.351	115.571	105.789	162.769	102.277	150.402	90.6997	103.608	172.572	155.006	117.664	115.837	256.143	224.574	73.9756	61.357	101.644	97.0383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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