TCONS_00045511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045511
Unique NameTCONS_00045511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045511 ID=TCONS_00045511|Name=TCONS_00045511|organism=Clytia hemisphaerica|type=transcript|length=525bp
caaaaaataaaataattgctCGTTGTTggttaattgaaaaatatattgct
cATGCCACAATGTTTTTGCCATATCGCTTATACACCTTGGAGTTGGAACG
CCATGGCTGCTGGAAAGAATATTTGCAGTATCGCTCAATTCTGAGAAAGA
TTACAAATAACAGTCTGCGtatcgattttttggaatcttgTCTGAAATCT
CAAATTGTTCCAAGATTTTTAAAGTTCCGAATACCAAAGAATGGATGCTT
TGATGATCGTTCAGTGCACGAGTTTCAAATACGACTTTTGCGCAAAGAAG
TCATTAATGCCAAAATTCACACATCCACATTGAATGATAACCTTACAAAA
GCTAGAAAAACGTTTAAAGAAAAGCTACCAATCAAATGTCGTGCATCAGT
TGTACTTCATACAAGATATGATATTCGTTTAACAAGGAAAAAACAGTCAT
CAAATTTAGATAAAAAACTGTCTCATTTATCAAGAGAACAAGACAAACCG
CTATTTAATGTCAAGAATACCGTCC
Run BLAST on NCBI

protein sequence of TCONS_00045511-protein

>TCONS_00045511-protein ID=TCONS_00045511-protein|Name=TCONS_00045511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
KNKIIARCWLIEKYIAHATMFLPYRLYTLELERHGCWKEYLQYRSILRKI
TNNSLRIDFLESCLKSQIVPRFLKFRIPKNGCFDDRSVHEFQIRLLRKEV
INAKIHTSTLNDNLTKARKTFKEKLPIKCRASVVLHTRYDIRLTRKKQSS
NLDKKLSHLSREQDKPLFNVKNTV
Run BLAST on NCBI

transcript from alignment at sc0008143:54..578

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045511 ID=TCONS_00045511|Name=TCONS_00045511|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at sc0008143:54..578 (Clytia hemisphaerica)
GGACGGTATTCTTGACATTAAATAGCGGTTTGTCTTGTTCTCTTGATAAA
TGAGACAGTTTTTTATCTAAATTTGATGACTGTTTTTTCCTTGTTAAACG
AATATCATATCTTGTATGAAGTACAACTGATGCACGACATTTGATTGGTA
GCTTTTCTTTAAACGTTTTTCTAGCTTTTGTAAGGTTATCATTCAATGTG
GATGTGTGAATTTTGGCATTAATGACTTCTTTGCGCAAAAGTCGTATTTG
AAACTCGTGCACTGAACGATCATCAAAGCATCCATTCTTTGGTATTCGGA
ACTTTAAAAATCTTGGAACAATTTGAGATTTCAGAcaagattccaaaaaa
tcgataCGCAGACTGTTATTTGTAATCTTTCTCAGAATTGAGCGATACTG
CAAATATTCTTTCCAGCAGCCATGGCGTTCCAACTCCAAGGTGTATAAGC
GATATGGCAAAAACATTGTGGCATgagcaatatatttttcaattaaccAA
CAACGagcaattattttattttttg

Coding sequence (CDS) from alignment at sc0008143:54..578

>TCONS_00045511 ID=TCONS_00045511|Name=TCONS_00045511|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0008143:54..578 (Clytia hemisphaerica)
GACGGTATTCTTGACATTAAATAGCGGTTTGTCTTGTTCTCTTGATAAAT
GAGACAGTTTTTTATCTAAATTTGATGACTGTTTTTTCCTTGTTAAACGA
ATATCATATCTTGTATGAAGTACAACTGATGCACGACATTTGATTGGTAG
CTTTTCTTTAAACGTTTTTCTAGCTTTTGTAAGGTTATCATTCAATGTGG
ATGTGTGAATTTTGGCATTAATGACTTCTTTGCGCAAAAGTCGTATTTGA
AACTCGTGCACTGAACGATCATCAAAGCATCCATTCTTTGGTATTCGGAA
CTTTAAAAATCTTGGAACAATTTGAGATTTCAGAcaagattccaaaaaat
cgataCGCAGACTGTTATTTGTAATCTTTCTCAGAATTGAGCGATACTGC
AAATATTCTTTCCAGCAGCCATGGCGTTCCAACTCCAAGGTGTATAAGCG
ATATGGCAAAAACATTGTGGCATgagcaatatatttttcaattaaccAAC
AACGagcaattattttattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029088XLOC_029088Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045511-proteinTCONS_00045511-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045511-exon-sc0008143-1491911889:54..578TCONS_00045511-exon-sc0008143-1491911889:54..578Clytia hemisphaericaexon
TCONS_00045511-exon-sc0008143-1510915933:54..578TCONS_00045511-exon-sc0008143-1510915933:54..578Clytia hemisphaericaexon
TCONS_00045511-exon-sc0008143-1575043694:54..578TCONS_00045511-exon-sc0008143-1575043694:54..578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008143supercontigsc0008143:54..578 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.449085	0.495204	0	0	0.43998	0.702918	0.57737	0.135132	0.189218	0.177947	0.113746	0.270682	0.448009	0.232631	0.164325	0.13683	0	0.086386	0.358041	0.59495	0.868402	1.11189	0.257456	0.351098	0.843785	0.499176	0.153946	0.164296	1.11144	0.761762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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