TCONS_00045510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045510
Unique NameTCONS_00045510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045510 ID=TCONS_00045510|Name=TCONS_00045510|organism=Clytia hemisphaerica|type=transcript|length=593bp
GAAGAACTTATTGATCAATACGAGCTTATAAATTCACTTGAAGTACCTGT
TGCCAAACCAGAGCCTGTCACAACACGTGTCACTAATAGCCGTGGACAAG
TTGTTAAAACGGTTGTCGTGCGGAAAGTGTATGTGACAGTTAAGACAGTT
TTGGTAAAAAAGGTTGTCGAAGAAGATGGTACTGAACGGGAGATTGAATC
AAGCACCGAATTGCTTCCTGATTCTCACTACGAGGAACCACCTGAAGGCG
AAGATCAAATCACCAGGAGAATCAACCCAGATTCATTCCCAGATGTGGTT
GAAGAGAGTGACCAGATTTCTCCAATGGAATCATCACATAAAACACCAAA
AGGATCTAAGGTTCTGGATGAACAAACCAAACCTGATGGTCGGAAAACGA
CAACGATAGAGAAGACATCTGAAGTGACTTCAAGACGTTTGATCACCAGA
AAGACGATTGAATATCCCGAAGATTCACCAGAAGAAAGATCTGAACCAGA
GATTGATATTTATGAAACTCCTGTCGAAGTTGGAGAAGAAACACCGTTTG
AAGAAAGTGTCGAGGAAGTTCGAGATCCCGAAGGTAATGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00045510-protein

>TCONS_00045510-protein ID=TCONS_00045510-protein|Name=TCONS_00045510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
EELIDQYELINSLEVPVAKPEPVTTRVTNSRGQVVKTVVVRKVYVTVKTV
LVKKVVEEDGTEREIESSTELLPDSHYEEPPEGEDQITRRINPDSFPDVV
EESDQISPMESSHKTPKGSKVLDEQTKPDGRKTTTIEKTSEVTSRRLITR
KTIEYPEDSPEERSEPEIDIYETPVEVGEETPFEESVEEVRDPEGNV
Run BLAST on NCBI

transcript from alignment at sc0008142:1..593

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045510 ID=TCONS_00045510|Name=TCONS_00045510|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0008142:1..593 (Clytia hemisphaerica)
ATGACATTACCTTCGGGATCTCGAACTTCCTCGACACTTTCTTCAAACGG
TGTTTCTTCTCCAACTTCGACAGGAGTTTCATAAATATCAATCTCTGGTT
CAGATCTTTCTTCTGGTGAATCTTCGGGATATTCAATCGTCTTTCTGGTG
ATCAAACGTCTTGAAGTCACTTCAGATGTCTTCTCTATCGTTGTCGTTTT
CCGACCATCAGGTTTGGTTTGTTCATCCAGAACCTTAGATCCTTTTGGTG
TTTTATGTGATGATTCCATTGGAGAAATCTGGTCACTCTCTTCAACCACA
TCTGGGAATGAATCTGGGTTGATTCTCCTGGTGATTTGATCTTCGCCTTC
AGGTGGTTCCTCGTAGTGAGAATCAGGAAGCAATTCGGTGCTTGATTCAA
TCTCCCGTTCAGTACCATCTTCTTCGACAACCTTTTTTACCAAAACTGTC
TTAACTGTCACATACACTTTCCGCACGACAACCGTTTTAACAACTTGTCC
ACGGCTATTAGTGACACGTGTTGTGACAGGCTCTGGTTTGGCAACAGGTA
CTTCAAGTGAATTTATAAGCTCGTATTGATCAATAAGTTCTTC

Coding sequence (CDS) from alignment at sc0008142:1..593

>TCONS_00045510 ID=TCONS_00045510|Name=TCONS_00045510|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0008142:1..593 (Clytia hemisphaerica)
GACATTACCTTCGGGATCTCGAACTTCCTCGACACTTTCTTCAAACGGTG
TTTCTTCTCCAACTTCGACAGGAGTTTCATAAATATCAATCTCTGGTTCA
GATCTTTCTTCTGGTGAATCTTCGGGATATTCAATCGTCTTTCTGGTGAT
CAAACGTCTTGAAGTCACTTCAGATGTCTTCTCTATCGTTGTCGTTTTCC
GACCATCAGGTTTGGTTTGTTCATCCAGAACCTTAGATCCTTTTGGTGTT
TTATGTGATGATTCCATTGGAGAAATCTGGTCACTCTCTTCAACCACATC
TGGGAATGAATCTGGGTTGATTCTCCTGGTGATTTGATCTTCGCCTTCAG
GTGGTTCCTCGTAGTGAGAATCAGGAAGCAATTCGGTGCTTGATTCAATC
TCCCGTTCAGTACCATCTTCTTCGACAACCTTTTTTACCAAAACTGTCTT
AACTGTCACATACACTTTCCGCACGACAACCGTTTTAACAACTTGTCCAC
GGCTATTAGTGACACGTGTTGTGACAGGCTCTGGTTTGGCAACAGGTACT
TCAAGTGAATTTATAAGCTCGTATTGATCAATAAGTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029087XLOC_029087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045510-exon-sc0008142-1491911889:1..593TCONS_00045510-exon-sc0008142-1491911889:1..593Clytia hemisphaericaexon
TCONS_00045510-exon-sc0008142-1510915933:1..593TCONS_00045510-exon-sc0008142-1510915933:1..593Clytia hemisphaericaexon
TCONS_00045510-exon-sc0008142-1575043694:1..593TCONS_00045510-exon-sc0008142-1575043694:1..593Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045510-proteinTCONS_00045510-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008142supercontigsc0008142:1..593 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.09239	0.0900948	0	0.102343	2.95355	1.06641	0.950255	0.588411	0.389276	0.192873	0.468017	0.430718	0.0614457	0.0638119	0.209848	0	0	0	0.258264	0.616634	0.357311	0.130713	0	0	0.19839	0.478421	0	0.237871	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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