TCONS_00045488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045488
Unique NameTCONS_00045488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045488 ID=TCONS_00045488|Name=TCONS_00045488|organism=Clytia hemisphaerica|type=transcript|length=634bp
GATAGGCATCACCAAGAATCAGAGGAAAGACATAAGTCATCTTTAATAGA
AAGACTGAGACAATTATCATCAGATACTAAACTCAGAGAAAACTCTGGAG
AAAAGGAGGATAAATACAGCCGATCTCGAAAAGATGACAATCGTAATAAA
AGCCTTGATCGAAAGCGACATAGTAAAAGCCCAGACCACCATTCATCATC
CAAACGCTCACGCCATTCAAGCGCTCATGAGAAATCAATTGACAGAGATA
GAGATAGACATAGAGATCGTAAAAGTAGAAGTCCTATCAAGGAGAAGGAC
TCGGATCGTAAACACACTTCACCTAGAGGTAAACCAGAAAGTAAACCCCT
TGTTGACTCGTCAAAATTTCTACGCAAAGATGAATTTGTTGCACTTCAAC
GTGAAGCTCGTATACACAGTATTGCCCCAGATTTAATGCACTCCATAAGT
TCAGGTAGCTCACCTGGAGAGCAACAAAGACTTGTTATTGAGGATTCTGA
AATAGATCAATCTCGTAAAATGAATCCAAATCCAATCTCAATGAATCTAT
CAGTAGATCTTACCAAAGTAAACGATCACCCTATCGAACAAGATGATAAA
CTTCAGTCTCCTCCACCACCTCCTCCACCTCCAC
Run BLAST on NCBI

protein sequence of TCONS_00045488-protein

>TCONS_00045488-protein ID=TCONS_00045488-protein|Name=TCONS_00045488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
DRHHQESEERHKSSLIERLRQLSSDTKLRENSGEKEDKYSRSRKDDNRNK
SLDRKRHSKSPDHHSSSKRSRHSSAHEKSIDRDRDRHRDRKSRSPIKEKD
SDRKHTSPRGKPESKPLVDSSKFLRKDEFVALQREARIHSIAPDLMHSIS
SGSSPGEQQRLVIEDSEIDQSRKMNPNPISMNLSVDLTKVNDHPIEQDDK
LQSPPPPPPPP
Run BLAST on NCBI

transcript from alignment at sc0008034:1..634

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045488 ID=TCONS_00045488|Name=TCONS_00045488|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0008034:1..634 (Clytia hemisphaerica)
GTGGAGGTGGAGGAGGTGGTGGAGGAGACTGAAGTTTATCATCTTGTTCG
ATAGGGTGATCGTTTACTTTGGTAAGATCTACTGATAGATTCATTGAGAT
TGGATTTGGATTCATTTTACGAGATTGATCTATTTCAGAATCCTCAATAA
CAAGTCTTTGTTGCTCTCCAGGTGAGCTACCTGAACTTATGGAGTGCATT
AAATCTGGGGCAATACTGTGTATACGAGCTTCACGTTGAAGTGCAACAAA
TTCATCTTTGCGTAGAAATTTTGACGAGTCAACAAGGGGTTTACTTTCTG
GTTTACCTCTAGGTGAAGTGTGTTTACGATCCGAGTCCTTCTCCTTGATA
GGACTTCTACTTTTACGATCTCTATGTCTATCTCTATCTCTGTCAATTGA
TTTCTCATGAGCGCTTGAATGGCGTGAGCGTTTGGATGATGAATGGTGGT
CTGGGCTTTTACTATGTCGCTTTCGATCAAGGCTTTTATTACGATTGTCA
TCTTTTCGAGATCGGCTGTATTTATCCTCCTTTTCTCCAGAGTTTTCTCT
GAGTTTAGTATCTGATGATAATTGTCTCAGTCTTTCTATTAAAGATGACT
TATGTCTTTCCTCTGATTCTTGGTGATGCCTATC

Coding sequence (CDS) from alignment at sc0008034:1..634

>TCONS_00045488 ID=TCONS_00045488|Name=TCONS_00045488|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0008034:1..634 (Clytia hemisphaerica)
TGGAGGTGGAGGAGGTGGTGGAGGAGACTGAAGTTTATCATCTTGTTCGA
TAGGGTGATCGTTTACTTTGGTAAGATCTACTGATAGATTCATTGAGATT
GGATTTGGATTCATTTTACGAGATTGATCTATTTCAGAATCCTCAATAAC
AAGTCTTTGTTGCTCTCCAGGTGAGCTACCTGAACTTATGGAGTGCATTA
AATCTGGGGCAATACTGTGTATACGAGCTTCACGTTGAAGTGCAACAAAT
TCATCTTTGCGTAGAAATTTTGACGAGTCAACAAGGGGTTTACTTTCTGG
TTTACCTCTAGGTGAAGTGTGTTTACGATCCGAGTCCTTCTCCTTGATAG
GACTTCTACTTTTACGATCTCTATGTCTATCTCTATCTCTGTCAATTGAT
TTCTCATGAGCGCTTGAATGGCGTGAGCGTTTGGATGATGAATGGTGGTC
TGGGCTTTTACTATGTCGCTTTCGATCAAGGCTTTTATTACGATTGTCAT
CTTTTCGAGATCGGCTGTATTTATCCTCCTTTTCTCCAGAGTTTTCTCTG
AGTTTAGTATCTGATGATAATTGTCTCAGTCTTTCTATTAAAGATGACTT
ATGTCTTTCCTCTGATTCTTGGTGATGCCTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029065XLOC_029065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045488-exon-sc0008034-1491911889:1..634TCONS_00045488-exon-sc0008034-1491911889:1..634Clytia hemisphaericaexon
TCONS_00045488-exon-sc0008034-1510915933:1..634TCONS_00045488-exon-sc0008034-1510915933:1..634Clytia hemisphaericaexon
TCONS_00045488-exon-sc0008034-1575043694:1..634TCONS_00045488-exon-sc0008034-1575043694:1..634Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045488-proteinTCONS_00045488-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008034supercontigsc0008034:1..634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.1645	44.202	35.5384	28.6657	150.623	118.936	70.6185	73.6477	41.5736	52.3669	40.849	28.6871	29.48	20.6408	32.1853	30.5211	53.83	33.3999	10.5598	19.3144	22.0339	23.3844	58.0022	47.7724	47.6808	50.7928	15.6815	13.071	50.4959	54.8457
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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