TCONS_00045481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045481
Unique NameTCONS_00045481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045481 ID=TCONS_00045481|Name=TCONS_00045481|organism=Clytia hemisphaerica|type=transcript|length=496bp
CAATATTAAATTCAACTGTTATCTTTCACCAAAAGACAACTGAAAACAGC
TATTTTTCATACCTTACCTCCAAGCATTATTTCAAAGACCACTATCCATT
GAAAGATCTCTCGGAAGAAAAGAAACTGTCTTTTTACAATTATTCACAGC
TTGAAAAATATACTCCAAATCAAGTTAAAGCCTCTCTATTTTGCCCTGAA
ATGAATATTCCTGCTCCGAAAGTCAAATTGTTTAAAGGTATCTACATGAT
TGATAATATATTGGTTTACCCCAAAGAATATTTGGAGTTCACGGACGCCA
TGCCCACCCAAAGGCTGCTCTTACCAGAAACAAAAGCACAAGAAGTTGCT
GCAAAGACTGTTCAATTATTGTCCCAAGTTTACCAAAGaaatttgttttt
gaagtcaatcataCACATTCACACAAACATTAACGGAAAATTCAAACCCC
ACTCcaatgttttcaaaacatattATTACGTGGAGCTACATGTTGA
Run BLAST on NCBI

protein sequence of TCONS_00045481-protein

>TCONS_00045481-protein ID=TCONS_00045481-protein|Name=TCONS_00045481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
ILNSTVIFHQKTTENSYFSYLTSKHYFKDHYPLKDLSEEKKLSFYNYSQL
EKYTPNQVKASLFCPEMNIPAPKVKLFKGIYMIDNILVYPKEYLEFTDAM
PTQRLLLPETKAQEVAAKTVQLLSQVYQRNLFLKSIIHIHTNINGKFKPH
SNVFKTYYYVELHV
Run BLAST on NCBI

transcript from alignment at sc0007997:1..645-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045481 ID=TCONS_00045481|Name=TCONS_00045481|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0007997:1..645- (Clytia hemisphaerica)
CAATATTAAATTCAACTGTTATCTTTCACCAAAAGACAACTGAAAACAGC
TATTTTTCATACCTTACCTCCAAGCATTATTTCAAAGACCACTATCCATT
GAAAGATCTCTCGGAAGAAAAGAAACTGTCTTTTTACAATTATTCACAGC
TTGAAAAATATACTCCAAATCAAGTTAAAGCCTCTCTATTTTGCCCTGAA
ATGAATATTCCTGCTCCGAAAGTCAAATTGTTTAAAGGTATCTACATGAT
TGATAATATATTGGTTTACCCCAAAGAATATTTGGAGTTCACGGACGCCA
TGCCCACCCAAAGGCTGCTCTTACCAGAAACAAAAGCACAAGAAGTTGCT
GCAAAGACTGTTCAATTATTGTCCCAAGTTTACCAAAGGTATATCTGTAT
CTGTGAAAAAGGCCTCTCTGTTATTTTCAGTTTGTAAACAAGAATTTGAT
TTTTCCGACAAAAGATATTACTTGATATTCTTTTCCAGAAATTTGGTTTT
GAAGACTGTAATTTTTTAACTTGATATTCTTTTCCAGAAATTTGTTTTTG
AAGTCAATCATACACATTCACACAAACATTAACGGAAAATTCAAACCCCA
CTCCAATGTTTTCAAAACATATTATTACGTGGAGCTACATGTTGA

Coding sequence (CDS) from alignment at sc0007997:1..645-

>TCONS_00045481 ID=TCONS_00045481|Name=TCONS_00045481|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0007997:1..645- (Clytia hemisphaerica)
AAATTTGTTTTTGAAGTCAATCATACACATTCACACAAACATTAACGGAA
AATTCAAACCCCACTCCAATGTTTTCAAAACATATTATTACGTGGAGCTA
CATGTTATATTAAATTCAACTGTTATCTTTCACCAAAAGACAACTGAAAA
CAGCTATTTTTCATACCTTACCTCCAAGCATTATTTCAAAGACCACTATC
CATTGAAAGATCTCTCGGAAGAAAAGAAACTGTCTTTTTACAATTATTCA
CAGCTTGAAAAATATACTCCAAATCAAGTTAAAGCCTCTCTATTTTGCCC
TGAAATGAATATTCCTGCTCCGAAAGTCAAATTGTTTAAAGGTATCTACA
TGATTGATAATATATTGGTTTACCCCAAAGAATATTTGGAGTTCACGGAC
GCCATGCCCACCCAAAGGCTGCTCTTACCAGAAACAAAAGCACAAGAAGT
TGCTGCAAAGACTGTTCAATTATTGTCCCAAGTTTACCAAAGAAATTTGT
TTTTGAAGTCAATCATACACATTCACACAAACATTAACGGAAAATTCAAA
CCCCACTCCAATGTTTTCAAAACATATTATTACGTGGAGCTACATGTTAT
ATTAAATTCAACTGTTATCTTTCACCAAAAGACAACTGAAAACAGCTATT
TTTCATACCTTACCTCCAAGCATTATTTCAAAGACCACTATCCATTGAAA
GATCTCTCGGAAGAAAAGAAACTGTCTTTTTACAATTATTCACAGCTTGA
AAAATATACTCCAAATCAAGTTAAAGCCTCTCTATTTTGCCCTGAAATGA
ATATTCCTGCTCCGAAAGTCAAATTGTTTAAAGGTATCTACATGATTGAT
AATATATTGGTTTACCCCAAAGAATATTTGGAGTTCACGGACGCCATGCC
CACCCAAAGGCTGCTCTTACCAGAAACAAAAGCACAAGAAGTTGCTGCAA
AGACTGTTCAATTATTGTCCCAAGTTTACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029058XLOC_029058Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045481-proteinTCONS_00045481-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045481-exon-sc0007997-1575043694:258..645TCONS_00045481-exon-sc0007997-1575043694:258..645Clytia hemisphaericaexon
TCONS_00045481-exon-sc0007997-1575043694:1..108TCONS_00045481-exon-sc0007997-1575043694:1..108Clytia hemisphaericaexon
TCONS_00045481-exon-sc0007997-1510915933:258..645TCONS_00045481-exon-sc0007997-1510915933:258..645Clytia hemisphaericaexon
TCONS_00045481-exon-sc0007997-1510915933:1..108TCONS_00045481-exon-sc0007997-1510915933:1..108Clytia hemisphaericaexon
TCONS_00045481-exon-sc0007997-1491911889:258..645TCONS_00045481-exon-sc0007997-1491911889:258..645Clytia hemisphaericaexon
TCONS_00045481-exon-sc0007997-1491911889:1..108TCONS_00045481-exon-sc0007997-1491911889:1..108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007997supercontigsc0007997:1..645 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.0904	3.45057	1.80443	1.47245	16.5036	12.1192	23.6802	23.3594	10.1044	10.8385	11.3645	10.6202	10.7699	6.79175	9.46382	9.17954	12.4209	12.2366	7.35876	10.5881	14.267	14.6862	9.09947	9.98007	11.5467	14.6878	18.4833	14.6108	25.1978	18.1722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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