TCONS_00045477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045477
Unique NameTCONS_00045477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045477 ID=TCONS_00045477|Name=TCONS_00045477|organism=Clytia hemisphaerica|type=transcript|length=276bp
CTTGTCATTTCGAAGAACTGTGTGAGCATTTTGAAAACACAGAAAATTCC
TGCGTCAGATCTTCGTGGTATAGGGATTCAAATGACCAAATTATGTGACA
GTTCGTCGGCTTCTACATCAAATACGTTGATGAAATTTGCACAAAAAGTA
ACTGTGGAGCAACTTCACCAGCGGGATAGAATCGTCAAGGCTTCTGAAAA
AGTACCGTCGCAACCACCAAAAACCGTCAAAGAAAAGCGTCTACCGTCAA
TCAATACTTTCATTCGGCGACATGAC
Run BLAST on NCBI

transcript from alignment at sc0007991:2..648+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045477 ID=TCONS_00045477|Name=TCONS_00045477|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at sc0007991:2..648+ (Clytia hemisphaerica)
CTTGTCATTTCGAAGAACTGTGTGAGCATTTTGAAAACACAGAAAATTCC
TGCGTCAGATCTTCGTGGTATAGGGATTCAAATGACCAAATTATGTGACA
GTTCGTCGGCTTCTACATCAAATACGTTGATGAAATTTGCACAAAAAGTA
ACTGTGGAGCAACTTCACCAGCGGGATAGAATCGTCAAGGTAATTTCTTA
CCAAATAATTGTAATATTGAGACCCgataatagaaaaataaaattttgaa
aaagataaatACTGTATCGAGTTTATATATGATACGGGTTATTTTTGACA
GTAACAAACACATTATTTTCCTAAAACAGCTTAGCTATTACCGGAGCCAG
TTCCGGCATGGGTTTTTTGTGTAACAAAAGTTAATTGTCTTTTAAGTATA
CGATACGGATTAATTTTTAGTTTGCGAACTTCCAATTCGTGGGTGGTGAG
TGGTAACACAATACACAGCTTGAACTTTCTTTATCTATTGTTTCACTtgt
ttaaaatgtttatttaaTTTCTTCGTGTAAAAATAACCATCTATAACTTT
ACTACGTCAGGCTTCTGAAAAAGTACCGTCGCAACCACCAAAAACCGTCA
AAGAAAAGCGTCTACCGTCAATCAATACTTTCATTCGGCGACATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029054XLOC_029054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045477-exon-sc0007991-1491911889:2..190TCONS_00045477-exon-sc0007991-1491911889:2..190Clytia hemisphaericaexon
TCONS_00045477-exon-sc0007991-1510915933:2..190TCONS_00045477-exon-sc0007991-1510915933:2..190Clytia hemisphaericaexon
TCONS_00045477-exon-sc0007991-1575043694:2..190TCONS_00045477-exon-sc0007991-1575043694:2..190Clytia hemisphaericaexon
TCONS_00045477-exon-sc0007991-1491911889:562..648TCONS_00045477-exon-sc0007991-1491911889:562..648Clytia hemisphaericaexon
TCONS_00045477-exon-sc0007991-1510915933:562..648TCONS_00045477-exon-sc0007991-1510915933:562..648Clytia hemisphaericaexon
TCONS_00045477-exon-sc0007991-1575043694:562..648TCONS_00045477-exon-sc0007991-1575043694:562..648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007991supercontigsc0007991:2..648 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.34287	8.13561	4.13272	3.46562	2.81271	1.66698	2.68152	1.2552	1.75759	2.72133	5.81105	3.81996	6.24215	4.44006	6.80995	6.67263	2.34861	6.41933	3.88003	6.38028	4.03318	2.21315	12.5551	9.24021	2.23934	6.99496	0.714983	0	4.05122	10.0241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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