TCONS_00045474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045474
Unique NameTCONS_00045474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045474 ID=TCONS_00045474|Name=TCONS_00045474|organism=Clytia hemisphaerica|type=transcript|length=650bp
GTTTAAACTTCCAACAGAAACTTCAAGCATTGGAAGGCCTAGTCACTTTG
TAGTATCCTCCTGGTGTTGATTCTTGGAAcgacaaaaatttgaaatgtgt
CCATTTTTTCCGCACGTATGGTATGTGATATTCCTGTATCGTTTGGTGCG
ACATTCTGCCTCTACATGTCCCTTTCTCTTGCAGAAGGTGCAAGTCTTGC
CGTTGCTGCGGTCTTTCGTTATTGAATTTAGTGATGATTTGACATTTTTG
GTGATCTTCTTTAGCTGTTCGATCTGTCTTGTCATTGCCACTGGATCGAA
GTCATTGTTGTCCATGACCTTGGAATGGGAAATANGTGCAAGTCTTGCCG
TTGCTGCGGTCTTTCGTTATTGAATTTAGTGATGATTTGACATTTTTGGT
GATCTTCTTTAGCTGTTCGATCTGTCTTGTCATTGCCACTGGATCGAAGT
CATTGTTGTCCATGACCTTGGAATGGGAAATACTTCTTCCATTGTTCATT
AACAGCTGGCGTACCATGTCCATTAATTCGCCATCCCGCTGGTTCGGTCG
TTCAAGTGCGTTCTTGAGCTGAATGAAACGTACAGCATCGTTGTACGTTT
TTGGCTGCTTCATCTGAAGCCGGTAGGCGAGTTCTGGCCTAAGATTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00045474-protein

>TCONS_00045474-protein ID=TCONS_00045474-protein|Name=TCONS_00045474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
ANLRPELAYRLQMKQPKTYNDAVRFIQLKNALERPNQRDGELMDMVRQLL
MNNGRSISHSKVMDNNDFDPVAMTRQIEQLKKITKNVKSSLNSITKDRSN
GKTCXYFPFQGHGQQ
Run BLAST on NCBI

transcript from alignment at sc0007974:2..651

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045474 ID=TCONS_00045474|Name=TCONS_00045474|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at sc0007974:2..651 (Clytia hemisphaerica)
CGCAAATCTTAGGCCAGAACTCGCCTACCGGCTTCAGATGAAGCAGCCAA
AAACGTACAACGATGCTGTACGTTTCATTCAGCTCAAGAACGCACTTGAA
CGACCGAACCAGCGGGATGGCGAATTAATGGACATGGTACGCCAGCTGTT
AATGAACAATGGAAGAAGTATTTCCCATTCCAAGGTCATGGACAACAATG
ACTTCGATCCAGTGGCAATGACAAGACAGATCGAACAGCTAAAGAAGATC
ACCAAAAATGTCAAATCATCACTAAATTCAATAACGAAAGACCGCAGCAA
CGGCAAGACTTGCACNTATTTCCCATTCCAAGGTCATGGACAACAATGAC
TTCGATCCAGTGGCAATGACAAGACAGATCGAACAGCTAAAGAAGATCAC
CAAAAATGTCAAATCATCACTAAATTCAATAACGAAAGACCGCAGCAACG
GCAAGACTTGCACCTTCTGCAAGAGAAAGGGACATGTAGAGGCAGAATGT
CGCACCAAACGATACAGGAATATCACATACCATACGTGCGGAAAAAATGG
acacatttcaaatttttgtcgTTCCAAGAATCAACACCAGGAGGATACTA
CAAAGTGACTAGGCCTTCCAATGCTTGAAGTTTCTGTTGGAAGTTTAAAC

Coding sequence (CDS) from alignment at sc0007974:2..651

>TCONS_00045474 ID=TCONS_00045474|Name=TCONS_00045474|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0007974:2..651 (Clytia hemisphaerica)
GCAAATCTTAGGCCAGAACTCGCCTACCGGCTTCAGATGAAGCAGCCAAA
AACGTACAACGATGCTGTACGTTTCATTCAGCTCAAGAACGCACTTGAAC
GACCGAACCAGCGGGATGGCGAATTAATGGACATGGTACGCCAGCTGTTA
ATGAACAATGGAAGAAGTATTTCCCATTCCAAGGTCATGGACAACAATGA
CTTCGATCCAGTGGCAATGACAAGACAGATCGAACAGCTAAAGAAGATCA
CCAAAAATGTCAAATCATCACTAAATTCAATAACGAAAGACCGCAGCAAC
GGCAAGACTTGCACNTATTTCCCATTCCAAGGTCATGGACAACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029051XLOC_029051Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045474-proteinTCONS_00045474-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045474-exon-sc0007974-1491911889:2..651TCONS_00045474-exon-sc0007974-1491911889:2..651Clytia hemisphaericaexon
TCONS_00045474-exon-sc0007974-1510915933:2..651TCONS_00045474-exon-sc0007974-1510915933:2..651Clytia hemisphaericaexon
TCONS_00045474-exon-sc0007974-1575043694:2..651TCONS_00045474-exon-sc0007974-1575043694:2..651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007974supercontigsc0007974:2..651 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.253526	0	1.52312	0.423709	0.413433	0.407612	1.16541	0.802018	0.454735	0.573448	0.696284	1.11505	1.31472	0.833873	0.392172	1.49475	0.234471	0.848545	0	0	0.369824	0.211408	0	0.149129	1.10042	5.13501	0.220621	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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