TCONS_00045469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045469
Unique NameTCONS_00045469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045469 ID=TCONS_00045469|Name=TCONS_00045469|organism=Clytia hemisphaerica|type=transcript|length=660bp
TATCTTATAAACTAAACTTGAAACATCCTACAAAAAAAACTTGATTGGCT
GACCCTTACATTTAGTTGACACTTACCTTGCAATTAAAAATAGTTAGGAG
AAATTCTACTAAATTTGTTACATAAAGTCAAATCAAGCAGATTGTGAAGC
TTGGCAAGTTTCCCTTGGGTTTAAATGTAGGGTTGCTGATTAATGATATA
AACTTGAATACTTcagtgggaaaattttttacaGGGATTGAATCTGGCAG
TTGGGTTTATTATCAGCAGAATTTTGAGATTTCGATTTTGTGCTTATCAC
TGCTAAATTCTGCATGTTGATTATTGAGATATATCCTTTTCTGATACTAG
TCAACGTTTtagttatttgacatttttcacaATAAAATTATCCCTACAAA
TTAATCACATGagtatttaatttttagaaTTCAGCGAGGATCTTTCATGT
TGTAAAGCTGCTTGGGCATACGCAAAATTTACTTGGCAAGTTACCGTTTC
CTTTTTCATTGACTCGATAATTCAAACCCGAAATTTTTGTATTTGTAGCT
TTGGGAGTTTCTGCCCCTAGGGtaactttatttttcatctaCTCTATACA
TCTTTTTATCTTGTTTATCCTTACtcagttttaatttttcacCATTGATA
TGATCATCAA
Run BLAST on NCBI

transcript from alignment at sc0007949:1..660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045469 ID=TCONS_00045469|Name=TCONS_00045469|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at sc0007949:1..660 (Clytia hemisphaerica)
TTGATGATCATATCAATGgtgaaaaattaaaactgaGTAAGGATAAACAA
GATAAAAAGATGTATAGAGtagatgaaaaataaagttaCCCTAGGGGCAG
AAACTCCCAAAGCTACAAATACAAAAATTTCGGGTTTGAATTATCGAGTC
AATGAAAAAGGAAACGGTAACTTGCCAAGTAAATTTTGCGTATGCCCAAG
CAGCTTTACAACATGAAAGATCCTCGCTGAAttctaaaaattaaatactC
ATGTGATTAATTTGTAGGGATAATTTTATtgtgaaaaatgtcaaataact
aAAACGTTGACTAGTATCAGAAAAGGATATATCTCAATAATCAACATGCA
GAATTTAGCAGTGATAAGCACAAAATCGAAATCTCAAAATTCTGCTGATA
ATAAACCCAACTGCCAGATTCAATCCCtgtaaaaaattttcccactgAAG
TATTCAAGTTTATATCATTAATCAGCAACCCTACATTTAAACCCAAGGGA
AACTTGCCAAGCTTCACAATCTGCTTGATTTGACTTTATGTAACAAATTT
AGTAGAATTTCTCCTAACTATTTTTAATTGCAAGGTAAGTGTCAACTAAA
TGTAAGGGTCAGCCAATCAAGTTTTTTTTGTAGGATGTTTCAAGTTTAGT
TTATAAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029046XLOC_029046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045469-exon-sc0007949-1491911889:1..660TCONS_00045469-exon-sc0007949-1491911889:1..660Clytia hemisphaericaexon
TCONS_00045469-exon-sc0007949-1510915933:1..660TCONS_00045469-exon-sc0007949-1510915933:1..660Clytia hemisphaericaexon
TCONS_00045469-exon-sc0007949-1575043694:1..660TCONS_00045469-exon-sc0007949-1575043694:1..660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007949supercontigsc0007949:1..660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78384	1.75175	2.84883	3.04604	0.375921	0.355077	0.687148	1.0415	0.99455	1.1654	0.493673	1.80478	0.379406	0.380325	0.411749	0.24919	0.118106	0.130866	0.27643	0.175009	2.3535	2.40255	1.81293	1.54547	0.168917	0.753774	0.21573	0	1.2728	0.680931
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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