TCONS_00045465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045465
Unique NameTCONS_00045465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045465 ID=TCONS_00045465|Name=TCONS_00045465|organism=Clytia hemisphaerica|type=transcript|length=180bp
CGCTTGAAAGGATGGTGGCAAGCACAGAATGGTGAACAAGAAGTTCAGAT
TCAGGTTGATTTTGAAGCTGAATTTGTGTTCACTCATTTGATCATGACCT
TTAAAACTTTCCGACCTAAAGCCATGTACATTGAACGCTCATGGAATTAC
GGAAAAGACTGGGATGTATACAGGTAATTT
Run BLAST on NCBI

transcript from alignment at sc0007934:1..576+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045465 ID=TCONS_00045465|Name=TCONS_00045465|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0007934:1..576+ (Clytia hemisphaerica)
CGCTTGAAAGGATGGTGGCAAGCACAGAATGGTGAACAAGAAGTTCAGAT
TCAGGTAATATTGTGACGTCATGAATATtgtcctgaaaaataaaaattat
atgcTTTATAGAACATAGCTCGAGGTCCATTTACAGCTTTTTATGGACTG
GATGATGACCCTGTAGTACCAGATTATAATtattacagtatatggccccc
aaaacggagattTAGCTTTGGTGAGTCATTTTGGCACTTTAAAGCCTGGG
AAAGCTTCAGATTCAATCCTAATACATTTCTCTTGAATCCGAAAAAAGAA
AGTACCAAAGTTTCATTAACATGGCTAATTTcgtttgaaagaaaaagaaa
tctgcgaaatttttacttcaatttCCAGTAGGGCTGAGGTCCCAGTGGGC
CTGTGAGTTTTTGGAGAGTCTATATAACCAAAATCCTCTTCGCCTTTTAG
GTTGATTTTGAAGCTGAATTTGTGTTCACTCATTTGATCATGACCTTTAA
AACTTTCCGACCTAAAGCCATGTACATTGAACGCTCATGGAATTACGGAA
AAGACTGGGATGTATACAGGTAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029042XLOC_029042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045465-exon-sc0007934-1491911889:1..54TCONS_00045465-exon-sc0007934-1491911889:1..54Clytia hemisphaericaexon
TCONS_00045465-exon-sc0007934-1510915933:1..54TCONS_00045465-exon-sc0007934-1510915933:1..54Clytia hemisphaericaexon
TCONS_00045465-exon-sc0007934-1575043694:1..54TCONS_00045465-exon-sc0007934-1575043694:1..54Clytia hemisphaericaexon
TCONS_00045465-exon-sc0007934-1491911889:451..576TCONS_00045465-exon-sc0007934-1491911889:451..576Clytia hemisphaericaexon
TCONS_00045465-exon-sc0007934-1510915933:451..576TCONS_00045465-exon-sc0007934-1510915933:451..576Clytia hemisphaericaexon
TCONS_00045465-exon-sc0007934-1575043694:451..576TCONS_00045465-exon-sc0007934-1575043694:451..576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007934supercontigsc0007934:1..576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.92492	0	0	2.61056	0	0	0	0	0	2.99607	0	1.32168	0	0	2.30562	0	0	0	0	0	4.65736	2.07829	0	0	0	0
Blast
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BLAST of TCONS_00045465 vs. Swiss-Prot (Human)
Match: LAMB1 (Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.094e-24
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 RLKGWWQAQNGEQEVQIQVDFEAEFVFTHLIMTFKTFRPKAMYIERSWNYGKDWDVYR*F 180
            RLK WWQ++NG + V IQ+D EAEF FTHLIMTFKTFRP AM IERS ++GK W VYR F
Sbjct:  107 RLKIWWQSENGVENVTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWGVYRYF 166
The following BLAST results are available for this feature:
BLAST of TCONS_00045465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAMB12.094e-2470.00Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE... [more]
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