TCONS_00045461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045461
Unique NameTCONS_00045461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045461 ID=TCONS_00045461|Name=TCONS_00045461|organism=Clytia hemisphaerica|type=transcript|length=422bp
AGGTTCACTGCATCTTATGATATTGACATGGCAGCTGACAAAGAAATTTC
CGAACCTGACGACAACGAAATTAAAAACATCACATTGTATTTTTGTGCAA
AGTGTCCAAATGATAAGAGATACAAGAAACCATATAAAACTGCCACTGGT
CGAAATTCCCATGAAGAAAAAAAGCATTCATACAAAAGGAATGTTGAGGA
ACCCATGGAAACTGAAGAGATTCTACAAGAACCAATCAACCACCGGCTAA
GTTACCAAAAAGGCCTTCTTACGTTCAATCTACTACTGCGCTCAATTAAC
GATGCAATCAGAGAGGGAGACGGAGAACGGctatttgaattttttcgaGT
GGCTTTACTGTACTTCAAGTGCTATGGTAGAACAAAATATTCCTACACTC
TTATCAAGTCACTGTTCCGCAT
Run BLAST on NCBI

protein sequence of TCONS_00045461-protein

>TCONS_00045461-protein ID=TCONS_00045461-protein|Name=TCONS_00045461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
RFTASYDIDMAADKEISEPDDNEIKNITLYFCAKCPNDKRYKKPYKTATG
RNSHEEKKHSYKRNVEEPMETEEILQEPINHRLSYQKGLLTFNLLLRSIN
DAIREGDGERLFEFFRVALLYFKCYGRTKYSYTLIKSLFR
Run BLAST on NCBI

transcript from alignment at sc0007904:70..657+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045461 ID=TCONS_00045461|Name=TCONS_00045461|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0007904:70..657+ (Clytia hemisphaerica)
AGGTTCACTGCATCTTATGATATTGACATGGCAGCTGACAAAGAAATTTC
CGAACCTGACGACAACGAAATTAAAAACATCACATTGTATTTTTGTGCAA
AGTGTCCAAATGATAAGAGATACAAGAAACCATATAAAACTGCCACTGGT
CGAAATTCCCATGAAGAAAAAAAGCATTCATACAAAAGGTTAGAATTACG
AAAAGTTTTTAGAATAATCTGGGGaataacaatagaaaaatataatgatg
aattagaaaaatttgatttcacaTATTACATTTTCCTACCAAGAAATATA
TTATACAACAGTATGGCTTCAAAATTACAACTGACAAATTTTTATCTTGT
TTAGGAATGTTGAGGAACCCATGGAAACTGAAGAGATTCTACAAGAACCA
ATCAACCACCGGCTAAGTTACCAAAAAGGCCTTCTTACGTTCAATCTACT
ACTGCGCTCAATTAACGATGCAATCAGAGAGGGAGACGGAGAACGGctat
ttgaattttttcgaGTGGCTTTACTGTACTTCAAGTGCTATGGTAGAACA
AAATATTCCTACACTCTTATCAAGTCACTGTTCCGCAT

Coding sequence (CDS) from alignment at sc0007904:70..657+

>TCONS_00045461 ID=TCONS_00045461|Name=TCONS_00045461|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0007904:70..657+ (Clytia hemisphaerica)
AGGTTCACTGCATCTTATGATATTGACATGGCAGCTGACAAAGAAATTTC
CGAACCTGACGACAACGAAATTAAAAACATCACATTGTATTTTTGTGCAA
AGTGTCCAAATGATAAGAGATACAAGAAACCATATAAAACTGCCACTGGT
CGAAATTCCCATGAAGAAAAAAAGCATTCATACAAAAGGAATGTTGAGGA
ACCCATGGAAACTGAAGAGATTCTACAAGAACCAATCAACCACCGGCTAA
GTTACCAAAAAGGCCTTCTTACGTTCAATCTACTACTGCGCTCAATTAAC
GATGCAATCAGAGAGGGAGACGGAGAACGGctatttgaattttttcgaGT
GGCTTTACTGTACTTCAAGTGCTATGGTAGAACAAAATATTCCTACACTC
TTATCAAGTCACTGTTCCGCAGGTTCACTGCATCTTATGATATTGACATG
GCAGCTGACAAAGAAATTTCCGAACCTGACGACAACGAAATTAAAAACAT
CACATTGTATTTTTGTGCAAAGTGTCCAAATGATAAGAGATACAAGAAAC
CATATAAAACTGCCACTGGTCGAAATTCCCATGAAGAAAAAAAGCATTCA
TACAAAAGGAATGTTGAGGAACCCATGGAAACTGAAGAGATTCTACAAGA
ACCAATCAACCACCGGCTAAGTTACCAAAAAGGCCTTCTTACGTTCAATC
TACTACTGCGCTCAATTAACGATGCAATCAGAGAGGGAGACGGAGAACGG
ctatttgaattttttcgaGTGGCTTTACTGTACTTCAAGTGCTATGGTAG
AACAAAATATTCCTACACTCTTATCAAGTCACTGTTCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029038XLOC_029038Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045461-proteinTCONS_00045461-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045461-exon-sc0007904-1491911889:70..257TCONS_00045461-exon-sc0007904-1491911889:70..257Clytia hemisphaericaexon
TCONS_00045461-exon-sc0007904-1510915933:70..257TCONS_00045461-exon-sc0007904-1510915933:70..257Clytia hemisphaericaexon
TCONS_00045461-exon-sc0007904-1575043694:70..257TCONS_00045461-exon-sc0007904-1575043694:70..257Clytia hemisphaericaexon
TCONS_00045461-exon-sc0007904-1491911889:424..657TCONS_00045461-exon-sc0007904-1491911889:424..657Clytia hemisphaericaexon
TCONS_00045461-exon-sc0007904-1510915933:424..657TCONS_00045461-exon-sc0007904-1510915933:424..657Clytia hemisphaericaexon
TCONS_00045461-exon-sc0007904-1575043694:424..657TCONS_00045461-exon-sc0007904-1575043694:424..657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007904supercontigsc0007904:70..657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.449237	0.354993	0.214142	0.400954	0.280717	0.347714	0.16875	0.221859	0.775427	0.115041	0.0945795	0	0	0.256319	0	0	0	0	0	0	0.715322	0.798009	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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