TCONS_00045457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045457
Unique NameTCONS_00045457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045457 ID=TCONS_00045457|Name=TCONS_00045457|organism=Clytia hemisphaerica|type=transcript|length=543bp
ACGAGTTCATGATTAATTCTTCGTTTCAATGTCTACCAGTACAGCTGGTC
GTTTGGTGTTTTTTATAtcggataaattttcgcgtttttgcaaatttttg
cctttttttgcaaaaatgaaactcgcgaaatttttcaaaacactgATTCa
cgaaataaaattcaaaaaatattgtgattttttggctcgtgaaaattaat
ccgattacgTAATATTTGCCCATCGCAACAACCAATCAAACATCAGTATT
AAGCAGATAAATCAACAAGATCATTCCAAACATAAATGCAAACATGATCA
AGCAAAGCACATCAAAAGTTTTCGCACAAGCAACAAgttcttttttaata
attttctcaaTATCTTCTTCACGAGCTTTGTCCTCGGCCATTTTTATGCT
CTTTTTCATTAGTCTAGCCGCCGTGCTTTCCAATTCGGAGTCAGGCTCAT
CGTGATTATGATTGGACTCTTTAAAACGAACAGTATTATTCTCTTTTAGA
GCGACGTCCTCTACCTCATCTTTGACGTAACCCGCATTGCCGT
Run BLAST on NCBI

transcript from alignment at sc0007892:1..683+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045457 ID=TCONS_00045457|Name=TCONS_00045457|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at sc0007892:1..683+ (Clytia hemisphaerica)
ACGAGTTCATGATTAATTCTTCGTTTCAATGTCTACCAGTACAGCTGGTC
GTTTGGTGTTTTTTATAtcggataaattttcgcgtttttgcaaatttttg
cctttttttgcaaaaatgaaactcgcgaaatttttcaaaacactgATTCa
cgaaataaaattcaaaaaatattgtgattttttggctcgtgaaaattaat
ccgattacgTAATATTTGCCCATCGCAACAACCAATCAAACATCAGTATT
AAGCAGATAAATCAACAAGATCATTCCAAACATAAATGCAAACATGATCA
AGCAAAGCACATCAAAAGTTTTCGCACAAGCAACAAgttcttttttaata
attttctcaaTATCTTCTTCACGAGCTTTGTCCTCGGCCATTTTTATGCT
CTTTTTCATTAGTCTAGCCGCCGTGCTTTCCAATTCGGAGTCAGGCTCGT
CATGATTATGATTGGACTCTTTAAAACGAACAGTATTATTCTCTTTTAGA
GCGACGTCCNGCGAGCTTTGTCCTCGGCCATTTTTATACTCTTTTTCATT
AGTCTAGCCGCTGTGCTTTCCAATTCGGAGTCAGGCTCATCGTGATTATG
ATTGGACTCTTTAAAACGAACAGTATTATTCTCTTTTAGAGCGACGTCCT
CTACCTCATCTTTGACGTAACCCGCATTGCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029034XLOC_029034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045457-exon-sc0007892-1491911889:1..444TCONS_00045457-exon-sc0007892-1491911889:1..444Clytia hemisphaericaexon
TCONS_00045457-exon-sc0007892-1510915933:1..444TCONS_00045457-exon-sc0007892-1510915933:1..444Clytia hemisphaericaexon
TCONS_00045457-exon-sc0007892-1575043694:1..444TCONS_00045457-exon-sc0007892-1575043694:1..444Clytia hemisphaericaexon
TCONS_00045457-exon-sc0007892-1491911889:585..683TCONS_00045457-exon-sc0007892-1491911889:585..683Clytia hemisphaericaexon
TCONS_00045457-exon-sc0007892-1510915933:585..683TCONS_00045457-exon-sc0007892-1510915933:585..683Clytia hemisphaericaexon
TCONS_00045457-exon-sc0007892-1575043694:585..683TCONS_00045457-exon-sc0007892-1575043694:585..683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007892supercontigsc0007892:1..683 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2869	11.245	16.07	15.2246	6.37482	4.61832	2.32782	2.58693	1.6407	0.900109	0.423845	0.74183	5.78833	2.93458	3.16556	2.876	2.20302	2.76491	8.02486	6.4218	4.85337	4.27614	10.9382	8.88124	1.16514	0.796304	11.4255	7.4955	1.75783	3.55983
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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