TCONS_00045454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045454
Unique NameTCONS_00045454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045454 ID=TCONS_00045454|Name=TCONS_00045454|organism=Clytia hemisphaerica|type=transcript|length=562bp
TTTCATCGTCAAGAAAAACTTCAATTCTTTTCTAAGTAAGTTCATGTTAC
ATATTACACTGACTGACATCAGCAGGGTTATCATCATTGGCCATTAAAAA
tgagaaggaaaaaaaacctTGAGTGTTTAGCTAACAAACTTTCCTCAGTT
ATTCTTATTTTCCAATTTGTTTCGTTTATAACTCATGAAGTGTAGCCTGT
ACCCGTGCCAAGCATGCTGatcgcgtttagcctaccaagttgactgaagt
acacgtttttttataaaatcatcCATTAAAAAATTAGGtgtttagagtcc
gcaaagcctaaaaatgttcttaacttgttcttaatattttgttaCTTACG
GTGAAATTTAGAGAAAATTCTTCGATAGAAAACTTAAGTTAAATTCCAAT
TTTTCCTAGTGCTTTCTTTGCCTCCTGTCAACAACGGAGCTGCCGTATTT
TCTACGAAATAGGCGTTTAGAGTATGGTACAGGCTTGTAGTAAGGGGAGA
ACATTATTGATCACGAATTTCGCACGCGCGTGCAGTTTGGCAGTGTTGGT
TTAACCTTACCA
Run BLAST on NCBI

transcript from alignment at sc0007879:36..597

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045454 ID=TCONS_00045454|Name=TCONS_00045454|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0007879:36..597 (Clytia hemisphaerica)
TGGTAAGGTTAAACCAACACTGCCAAACTGCACGCGCGTGCGAAATTCGT
GATCAATAATGTTCTCCCCTTACTACAAGCCTGTACCATACTCTAAACGC
CTATTTCGTAGAAAATACGGCAGCTCCGTTGTTGACAGGAGGCAAAGAAA
GCACTAGGAAAAATTGGAATTTAACTTAAGTTTTCTATCGAAGAATTTTC
TCTAAATTTCACCGTAAGtaacaaaatattaagaacaagttaagaacatt
tttaggctttgcggactctaaacaCCTAATTTTTTAATGgatgattttat
aaaaaaacgtgtacttcagtcaacttggtaggctaaacgcgatCAGCATG
CTTGGCACGGGTACAGGCTACACTTCATGAGTTATAAACGAAACAAATTG
GAAAATAAGAATAACTGAGGAAAGTTTGTTAGCTAAACACTCAaggtttt
ttttccttctcaTTTTTAATGGCCAATGATGATAACCCTGCTGATGTCAG
TCAGTGTAATATGTAACATGAACTTACTTAGAAAAGAATTGAAGTTTTTC
TTGACGATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029032XLOC_029032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045454-exon-sc0007879-1491911889:36..597TCONS_00045454-exon-sc0007879-1491911889:36..597Clytia hemisphaericaexon
TCONS_00045454-exon-sc0007879-1510915933:36..597TCONS_00045454-exon-sc0007879-1510915933:36..597Clytia hemisphaericaexon
TCONS_00045454-exon-sc0007879-1575043694:36..597TCONS_00045454-exon-sc0007879-1575043694:36..597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007879supercontigsc0007879:36..597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.603021	0.490034	1.02416	1.89262	0.271069	0.214203	0.387639	0.241936	0.0846924	0.104905	0.305471	0.0669348	0.267367	0.555326	0.114138	0.122488	0.0754476	0.0773314	0.320512	0	0.485863	0.71096	0.115235	0.104766	0.215812	0.0963037	0.275621	0.29415	0.334653	0.454612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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