TCONS_00045439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045439
Unique NameTCONS_00045439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045439 ID=TCONS_00045439|Name=TCONS_00045439|organism=Clytia hemisphaerica|type=transcript|length=699bp
ataaggtatatctaTATTAAACTTTAATCAATAcctcgatttaaaagcct
agaACGGCGAATATTGCGTATTTTTGATAGCGCGTGTCTTAAATTAAATG
GCATTGACGGCTTATTACGCCTTTTAACGTCTGGCGTAAAATGGGCGGGC
GAgctatttctaatttttatatTCAAGAACCTTTTTATTATAGTATGCCC
ACGACCATTACGTATGATACTGATCATTGCCGATGTAAACATCCTCTCCA
ACACTGACATGTTCAACAAATTGGTCGTCTTTCTCAACAAGTTCATCAGT
AAAACTAGAAAAGTTCGCATACAGTTGGCATATCAAGCTAAAATCGGTGG
TAATGTGATGTAAGACATCTTAATATTAGATTTTACTGAGCTCAAACCTC
TTCTTCATTAATGCAATTGAATACAAAGATAGTTACAGTGGAGTTTCTTt
gactcgaacctctataactcgaatgtctccttataACTAggacaagtttt
atggtccattcagttaacaatgccttataaaccttactccataactggAA
ATTTgcttaactcaaacaaatttgtgttcccacGGTCGGAACCATACGTT
CCCGATTTCGTGGAACAAGAAATTTGCACTTCAATAGTCCATCCCCTCCC
AAAAAGAATCGGCAAGGAATGAGACATTATCTTTGAAAAGTTGGACCTT
Run BLAST on NCBI

transcript from alignment at sc0007825:1..699

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045439 ID=TCONS_00045439|Name=TCONS_00045439|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at sc0007825:1..699 (Clytia hemisphaerica)
AAGGTCCAACTTTTCAAAGATAATGTCTCATTCCTTGCCGATTCTTTTTG
GGAGGGGATGGACTATTGAAGTGCAAATTTCTTGTTCCACGAAATCGGGA
ACGTATGGTTCCGACCgtgggaacacaaatttgtttgagttaagcAAATT
Tccagttatggagtaaggtttataaggcattgttaactgaatggaccata
aaacttgtccTAGTtataaggagacattcgagttatagaggttcgagtca
AAGAAACTCCACTGTAACTATCTTTGTATTCAATTGCATTAATGAAGAAG
AGGTTTGAGCTCAGTAAAATCTAATATTAAGATGTCTTACATCACATTAC
CACCGATTTTAGCTTGATATGCCAACTGTATGCGAACTTTTCTAGTTTTA
CTGATGAACTTGTTGAGAAAGACGACCAATTTGTTGAACATGTCAGTGTT
GGAGAGGATGTTTACATCGGCAATGATCAGTATCATACGTAATGGTCGTG
GGCATACTATAATAAAAAGGTTCTTGAatataaaaattagaaatagcTCG
CCCGCCCATTTTACGCCAGACGTTAAAAGGCGTAATAAGCCGTCAATGCC
ATTTAATTTAAGACACGCGCTATCAAAAATACGCAATATTCGCCGTtcta
ggcttttaaatcgaggTATTGATTAAAGTTTAATAtagatataccttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029017XLOC_029017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045439-exon-sc0007825-1491911889:1..699TCONS_00045439-exon-sc0007825-1491911889:1..699Clytia hemisphaericaexon
TCONS_00045439-exon-sc0007825-1510915933:1..699TCONS_00045439-exon-sc0007825-1510915933:1..699Clytia hemisphaericaexon
TCONS_00045439-exon-sc0007825-1575043694:1..699TCONS_00045439-exon-sc0007825-1575043694:1..699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007825supercontigsc0007825:1..699 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.59112	0.564839	0.251286	0.401018	0.683482	0.23147	1.58247	0.962691	0.246961	0.226724	0.513482	0.048705	2.27232	2.20034	1.03146	1.65349	1.70848	2.73845	0.935301	2.13345	0.992564	0.409745	0.750949	0.685559	1.94341	0.832536	0.103143	0	0.4111	0.409382
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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