TCONS_00045436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045436
Unique NameTCONS_00045436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045436 ID=TCONS_00045436|Name=TCONS_00045436|organism=Clytia hemisphaerica|type=transcript|length=710bp
cgaacatggcccgaagaggcccgagaattctcgggccatgtcgagggtcg
tagaGTACACCGTCTttggttttataaaaaaacttacaaAAGTCCACTGC
AGGAAGTGCAAACGAATGCTCCAATCGTCATATTTACATAGGTTGGTCCT
CTTTGTCCACAATCAAAGCATTTCTTATTTTGAGGTTGGGTAACAAGATC
TCTCAAGATTTTGAGGTGTTTGTCCTCTTGTTTTCTTCGAGGACCCATTT
TATCTGCCCTCCTGTGCGCCATCTTGGAATTTTTGTTATGACCTAAGTGA
ATCCGTTTTCGTTTTTGCAGACTAAAGGTAAAATTCGATTCttgataaat
ttttgttttagaaagTCAAGGAATGATGTGACTTCAcaaattcaattaat
tttaCAATTCTATGAATTATCTTTGTTCAGAGTAATTTTCCAGCAAATAA
TTTCCTTTTAAACAGTAAAAAAAGAAGTCAGTAAATTATTATTCTCAAGA
ATTTACCCGATATTACCCCGATGTTTAATTTGTGGATACATAATCGGGTT
TAGAACATTCTAATCAAGTGCATTTTCAGCAAGAACCCTTTATGTGTCAG
AAGTACGTTTTCAATCGAGTAACGCTGCTTGTTATGATCTAAAATCTGAG
ACGTACTTTAAAAAAAGGCGTTCATCTAAGGATCAGGAATTCCCTACTGT
TAAAAAAGTA
Run BLAST on NCBI

transcript from alignment at sc0007819:6..715

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045436 ID=TCONS_00045436|Name=TCONS_00045436|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at sc0007819:6..715 (Clytia hemisphaerica)
TACTTTTTTAACAGTAGGGAATTCCTGATCCTTAGATGAACGCCTTTTTT
TAAAGTACGTCTCAGATTTTAGATCATAACAAGCAGCGTTACTCGATTGA
AAACGTACTTCTGACACATAAAGGGTTCTTGCTGAAAATGCACTTGATTA
GAATGTTCTAAACCCGATTATGTATCCACAAATTAAACATCGGGGTAATA
TCGGGTAAATTCTTGAGAATAATAATTTACTGACTTCTTTTTTTACTGTT
TAAAAGGAAATTATTTGCTGGAAAATTACTCTGAACAAAGATAATTCATA
GAATTGtaaaattaattgaatttgTGAAGTCACATCATTCCTTGActttc
taaaacaaaaatttatcaaGAATCGAATTTTACCTTTAGTCTGCAAAAAC
GAAAACGGATTCACTTAGGTCATAACAAAAATTCCAAGATGGCGCACAGG
AGGGCAGATAAAATGGGTCCTCGAAGAAAACAAGAGGACAAACACCTCAA
AATCTTGAGAGATCTTGTTACCCAACCTCAAAATAAGAAATGCTTTGATT
GTGGACAAAGAGGACCAACCTATGTAAATATGACGATTGGAGCATTCGTT
TGCACTTCCTGCAGTGGACTTttgtaagtttttttataaaaccaaAGACG
GTGTACtctacgaccctcgacatggcccgagaattctcgggcctcttcgg
gccatgttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029014XLOC_029014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045436-exon-sc0007819-1491911889:6..715TCONS_00045436-exon-sc0007819-1491911889:6..715Clytia hemisphaericaexon
TCONS_00045436-exon-sc0007819-1510915933:6..715TCONS_00045436-exon-sc0007819-1510915933:6..715Clytia hemisphaericaexon
TCONS_00045436-exon-sc0007819-1575043694:6..715TCONS_00045436-exon-sc0007819-1575043694:6..715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007819supercontigsc0007819:6..715 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.79169	10.0382	30.8348	34.255	6.137	5.92111	5.10151	7.52397	4.48642	8.21911	6.10756	2.61107	8.08466	7.18107	5.1245	5.45854	9.86587	9.11173	5.13541	6.99736	9.21306	7.42065	6.98266	7.89841	9.32642	10.8018	10.681	7.68109	11.412	10.3541
Blast
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BLAST of TCONS_00045436 vs. Swiss-Prot (Human)
Match: AGFG1 (Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.386e-21
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = -1 
Query:   87 RRKQEDKHLKILRDLVTQPQNKKCFDCGQRGPTYVNMTIGAFVCTSCSGLL 239
            +RKQE+KHLK+LRD+   P N+KCFDC QRGPTYVNMT+G+FVCTSCSG L
Sbjct:    6 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSL 56
The following BLAST results are available for this feature:
BLAST of TCONS_00045436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGFG12.386e-2174.51Arf-GAP domain and FG repeat-containing protein 1 ... [more]
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