TCONS_00045432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045432
Unique NameTCONS_00045432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045432 ID=TCONS_00045432|Name=TCONS_00045432|organism=Clytia hemisphaerica|type=transcript|length=676bp
AAAGGTTTGAAATTTAGCGGGGATTTAAATTTGTAAGTGATACGTTTGGA
AATCATACGGTTTTGTGCCTGTTTGCAACACTTCTATGATGTCTAAAGTG
GTATTTTAGGTGGCCTTTAGTGATAGATAAggtgttttgaattttcattg
tCACTCTAGTGTCACTAACTTGGATGACATAGAAATCCCTATGAAATTTT
GGCCCATTGAAGTACTTTAAATAGTGAACATTGTAACTTAGTTGTTCCAT
CTCTTTTATCTTCAGGTACTGGAGAATCTGGCAAAAGCACTTTTATCAAA
CAGATGAGAATTATCCATGGACAAGGTTACTCAGAAGATGACAGAAAAAG
CTTTGCAAAGCTTGTCTATCAAAATATATTCCAAGCCATGCAAGCACTAT
GTAGAGCAATGAACGATAAAAAAATAGCTTATAAAAATGCTGATAATGAG
GTATGTTCATTTTCTAATATCACAGCATGCTGTTTTACACCAATTTTAAA
GACTGACATTAAGACCAACCCTTAGAATCCGTTGCTtatatttcaaactt
taaacGGCATTTTTGTATGTTTGAGTATCAGACTTGTAATATACtctttg
ctcagaatttcatgctccaCTGATGAAAGTATTTAATTTCAATGGAttcg
acttttgaaaatcatctATCGCTAAT
Run BLAST on NCBI

transcript from alignment at sc0007799:48..723

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045432 ID=TCONS_00045432|Name=TCONS_00045432|organism=Clytia hemisphaerica|type=transcript|length=676bp|location=Sequence derived from alignment at sc0007799:48..723 (Clytia hemisphaerica)
ATTAGCGATagatgattttcaaaagtcgaaTCCATTGAAATTAAATACTT
TCATCAGtggagcatgaaattctgagcaaagaGTATATTACAAGTCTGAT
ACTCAAACATACAAAAATGCCgtttaaagtttgaaatataAGCAACGGAT
TCTAAGGGTTGGTCTTAATGTCAGTCTTTAAAATTGGTGTAAAACAGCAT
GCTGTGATATTAGAAAATGAACATACCTCATTATCAGCATTTTTATAAGC
TATTTTTTTATCGTTCATTGCTCTACATAGTGCTTGCATGGCTTGGAATA
TATTTTGATAGACAAGCTTTGCAAAGCTTTTTCTGTCATCTTCTGAGTAA
CCTTGTCCATGGATAATTCTCATCTGTTTGATAAAAGTGCTTTTGCCAGA
TTCTCCAGTACCTGAAGATAAAAGAGATGGAACAACTAAGTTACAATGTT
CACTATTTAAAGTACTTCAATGGGCCAAAATTTCATAGGGATTTCTATGT
CATCCAAGTTAGTGACACTAGAGTGacaatgaaaattcaaaacaccTTAT
CTATCACTAAAGGCCACCTAAAATACCACTTTAGACATCATAGAAGTGTT
GCAAACAGGCACAAAACCGTATGATTTCCAAACGTATCACTTACAAATTT
AAATCCCCGCTAAATTTCAAACCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029010XLOC_029010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045432-exon-sc0007799-1491911889:48..723TCONS_00045432-exon-sc0007799-1491911889:48..723Clytia hemisphaericaexon
TCONS_00045432-exon-sc0007799-1510915933:48..723TCONS_00045432-exon-sc0007799-1510915933:48..723Clytia hemisphaericaexon
TCONS_00045432-exon-sc0007799-1575043694:48..723TCONS_00045432-exon-sc0007799-1575043694:48..723Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007799supercontigsc0007799:48..723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1799	10.0011	15.9991	16.9149	113.309	84.6806	120.233	116.218	62.3535	69.3053	50.6445	44.9792	49.6155	42.2388	36.5379	36.1091	66.2118	69.8524	52.0884	64.5631	86.526	90.0694	56.7054	58.9182	50.0809	60.7837	44.4803	36.6868	49.6646	49.999
Blast
[Close]
BLAST of TCONS_00045432 vs. Swiss-Prot (Human)
Match: GNA11 (Guanine nucleotide-binding protein subunit alpha-11 OS=Homo sapiens GN=GNA11 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.013e-24
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:  253 LLSSGTGESGKSTFIKQMRIIHGQGYSEDDRKSFAKLVYQNIFQAMQALCRAMNDKKIAYKNADN 447
            LL  GTGESGKSTFIKQMRIIHG GYSE+D++ F KLVYQNIF AMQA+ RAM   KI YK   N
Sbjct:   42 LLLLGTGESGKSTFIKQMRIIHGAGYSEEDKRGFTKLVYQNIFTAMQAMIRAMETLKILYKYEQN 106
The following BLAST results are available for this feature:
BLAST of TCONS_00045432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GNA115.013e-2472.31Guanine nucleotide-binding protein subunit alpha-1... [more]
back to top