TCONS_00045423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045423
Unique NameTCONS_00045423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045423 ID=TCONS_00045423|Name=TCONS_00045423|organism=Clytia hemisphaerica|type=transcript|length=509bp
GAACAAATTTGATGATCTTCATAAAAAAGCGCCCCGAATGGTTTTGGaaa
ttaatttatttgtatGTAGAAAGCCTTTCATTATTTTTACTCAGCTTTCG
GAATTGGTACTTGCCATCCTTGAAATCGATAATGAAGGTGATGAAAAATA
CAACCAACTCATTTTCCCGACATCTCGATCAAACTTCAAATGCAGTATTC
TTCATTTAGCAGCTGAGCGTTCTCTTACACAAATAATTAAATACGCAGTG
GAATTTTACCCTAAGCTTGGTAACAAAGCTGTCAGTATCGATGACGAGGA
TTATTATCCCCTACATTTCTTATTGGAGAAAAAAGATGAGGTTTTGCCGG
CACCGATTATGAAGGCCACCGACGAATCAGCCAGTTTTTTGATCAGTGTC
ATGGAGAATGACCgCGTACGTCTGCTGTTTGAGAGTAGCGATCGAGAGTT
GGCAAGTTTCAAATTCAAAGACCTCATCATTCACGGTGGCTTCAAcgtaa
gaaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00045423-protein

>TCONS_00045423-protein ID=TCONS_00045423-protein|Name=TCONS_00045423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
NKFDDLHKKAPRMVLEINLFVCRKPFIIFTQLSELVLAILEIDNEGDEKY
NQLIFPTSRSNFKCSILHLAAERSLTQIIKYAVEFYPKLGNKAVSIDDED
YYPLHFLLEKKDEVLPAPIMKATDESASFLISVMENDRVRLLFESSDREL
ASFKFKDLIIHGGFNVRKK
Run BLAST on NCBI

transcript from alignment at sc0007778:29..710+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045423 ID=TCONS_00045423|Name=TCONS_00045423|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at sc0007778:29..710+ (Clytia hemisphaerica)
GAACAAATTTGATGATCTTCATAAAAAAGCGCCCCGAATGGTTTTGGaaa
ttaatttatttgtatGTAGAAAGCCTTTCATTATTTTTACTCAGCTTTCG
GAATTGGTACTTGCCATCCTTGAAATCGATAATGAAGGTGATGAAAAATA
CAACCAACTCATTTTCCCGACATCTCGATCAAACTTCAAATGCAGTATTC
TTCATTTAGCAGCTGAGCGTTCTCTTACACAAATAATTAAATACGCAGTG
GAATTTTACCCTAAGCTTGGTAACAAAGCTGTCAGTATCGATGACGAGGA
TTATTATCCCCTACATTTCTTATTGGAGAAAAAAGATGAGGTTTTGCCGG
CACCGATTATGAAGGCCACCGACGAATCAGCCAGTTTTTTGATCAGTGTC
ATGGAGAATGACCggtaaaaatctatctttatcTCCAGAGAGCGACAAAA
GTATATTAGGAGGAAATCtgtcttacatttttttataagaacaattaagT
TTTAAGTTTGAGATGTTTTTTGATATTCTGCGCTTCAAAATCTCAAATAT
TGCCACCATActaatttccatttttttaaattgttagCGTACGTCTGCTG
TTTGAGAGTAGCGATCGAGAGTTGGCAAGTTTCAAATTCAAAGACCTCAT
CATTCACGGTGGCTTCAAcgtaagaaaaaaat

Coding sequence (CDS) from alignment at sc0007778:29..710+

>TCONS_00045423 ID=TCONS_00045423|Name=TCONS_00045423|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0007778:29..710+ (Clytia hemisphaerica)
AACAAATTTGATGATCTTCATAAAAAAGCGCCCCGAATGGTTTTGGaaat
taatttatttgtatGTAGAAAGCCTTTCATTATTTTTACTCAGCTTTCGG
AATTGGTACTTGCCATCCTTGAAATCGATAATGAAGGTGATGAAAAATAC
AACCAACTCATTTTCCCGACATCTCGATCAAACTTCAAATGCAGTATTCT
TCATTTAGCAGCTGAGCGTTCTCTTACACAAATAATTAAATACGCAGTGG
AATTTTACCCTAAGCTTGGTAACAAAGCTGTCAGTATCGATGACGAGGAT
TATTATCCCCTACATTTCTTATTGGAGAAAAAAGATGAGGTTTTGCCGGC
ACCGATTATGAAGGCCACCGACGAATCAGCCAGTTTTTTGATCAGTGTCA
TGGAGAATGACCgCGTACGTCTGCTGTTTGAGAGTAGCGATCGAGAGTTG
GCAAGTTTCAAATTCAAAGACCTCATCATTCACGGTGGCTTCAAcgtaag
aaaaaaaAACAAATTTGATGATCTTCATAAAAAAGCGCCCCGAATGGTTT
TGGaaattaatttatttgtatGTAGAAAGCCTTTCATTATTTTTACTCAG
CTTTCGGAATTGGTACTTGCCATCCTTGAAATCGATAATGAAGGTGATGA
AAAATACAACCAACTCATTTTCCCGACATCTCGATCAAACTTCAAATGCA
GTATTCTTCATTTAGCAGCTGAGCGTTCTCTTACACAAATAATTAAATAC
GCAGTGGAATTTTACCCTAAGCTTGGTAACAAAGCTGTCAGTATCGATGA
CGAGGATTATTATCCCCTACATTTCTTATTGGAGAAAAAAGATGAGGTTT
TGCCGGCACCGATTATGAAGGCCACCGACGAATCAGCCAGTTTTTTGATC
AGTGTCATGGAGAATGACCgCGTACGTCTGCTGTTTGAGAGTAGCGATCG
AGAGTTGGCAAGTTTCAAATTCAAAGACCTCATCATTCACGGTGGCTTCA
Acgtaagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029001XLOC_029001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045423-proteinTCONS_00045423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045423-exon-sc0007778-1491911889:29..442TCONS_00045423-exon-sc0007778-1491911889:29..442Clytia hemisphaericaexon
TCONS_00045423-exon-sc0007778-1510915933:29..442TCONS_00045423-exon-sc0007778-1510915933:29..442Clytia hemisphaericaexon
TCONS_00045423-exon-sc0007778-1575043694:29..442TCONS_00045423-exon-sc0007778-1575043694:29..442Clytia hemisphaericaexon
TCONS_00045423-exon-sc0007778-1491911889:616..710TCONS_00045423-exon-sc0007778-1491911889:616..710Clytia hemisphaericaexon
TCONS_00045423-exon-sc0007778-1510915933:616..710TCONS_00045423-exon-sc0007778-1510915933:616..710Clytia hemisphaericaexon
TCONS_00045423-exon-sc0007778-1575043694:616..710TCONS_00045423-exon-sc0007778-1575043694:616..710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007778supercontigsc0007778:29..710 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.4796	28.8303	10.3102	10.6109	67.3002	49.1488	70.699	65.0488	47.2363	55.7942	38.5796	41.0339	32.6399	32.9984	25.0475	30.6271	24.8575	37.0343	25.2681	25.652	16.6936	22.0853	18.4407	19.7239	21.4579	23.3434	6.16196	3.80728	9.31935	11.6346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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