TCONS_00045421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045421
Unique NameTCONS_00045421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045421 ID=TCONS_00045421|Name=TCONS_00045421|organism=Clytia hemisphaerica|type=transcript|length=354bp
TTTCTGGCCAGATAATGGCTAGAGTAAGCTAATATGCGGAACTGAGACAA
TAGGTTGTCACAGTCTCTCAAACGACTATTTCAGGCTACACAGACTAAAT
TACAGGCTATTAGACAAAGGAAAACTTGAGTAAAAAGAttcattgaaaag
aaacatTGAGGTCCAAGTATCGATCCCTGAGGAACGCCGTATTCAACAGA
GGATTCGGTCGATGTAACTCCATTCACTTTGGTGATTTGCGATCCTTCTT
TGAGGTAGCTCATCATGAATTCGAGGAAATCCCCCGACACCCCACATGCA
GAGAGTTTATTCAATAGCACTTCATGAGACACACTGTCAAAAGCCTTCTT
AANN
Run BLAST on NCBI

transcript from alignment at sc0007775:381..734

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045421 ID=TCONS_00045421|Name=TCONS_00045421|organism=Clytia hemisphaerica|type=transcript|length=354bp|location=Sequence derived from alignment at sc0007775:381..734 (Clytia hemisphaerica)
NNTTAAGAAGGCTTTTGACAGTGTGTCTCATGAAGTGCTATTGAATAAAC
TCTCTGCATGTGGGGTGTCGGGGGATTTCCTCGAATTCATGATGAGCTAC
CTCAAAGAAGGATCGCAAATCACCAAAGTGAATGGAGTTACATCGACCGA
ATCCTCTGTTGAATACGGCGTTCCTCAGGGATCGATACTTGGACCTCAat
gtttcttttcaatgaaTCTTTTTACTCAAGTTTTCCTTTGTCTAATAGCC
TGTAATTTAGTCTGTGTAGCCTGAAATAGTCGTTTGAGAGACTGTGACAA
CCTATTGTCTCAGTTCCGCATATTAGCTTACTCTAGCCATTATCTGGCCA
GAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028999XLOC_028999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045421-exon-sc0007775-1491911889:381..734TCONS_00045421-exon-sc0007775-1491911889:381..734Clytia hemisphaericaexon
TCONS_00045421-exon-sc0007775-1510915933:381..734TCONS_00045421-exon-sc0007775-1510915933:381..734Clytia hemisphaericaexon
TCONS_00045421-exon-sc0007775-1575043694:381..734TCONS_00045421-exon-sc0007775-1575043694:381..734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007775supercontigsc0007775:381..734 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60801	0.954382	1.10813	1.08413	0.659913	1.82515	1.57283	1.17797	1.03091	1.53234	2.72676	2.93313	1.9527	2.19689	0.416802	0.298195	1.46941	0.376523	1.30047	1.08868	1.18282	0	0.280538	1.0202	1.31348	1.4067	0.335496	0.716102	0	0.830057
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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