TCONS_00045414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045414
Unique NameTCONS_00045414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045414 ID=TCONS_00045414|Name=TCONS_00045414|organism=Clytia hemisphaerica|type=transcript|length=392bp
GAAATTACGAGACGGagtatcaaaatatttttgccaggAAGAACTCCAGC
CAGAACAAGTTGGTTTCACCTCTGCTTGAGGCGGTCAAAGACAACCAGGA
ATTCACGGATTATTACAAACAGGtgttaaacaaaagaatttacgCCTATT
CGCCTTCGATGCGAGAATCGTCAGCGAACACATCAAACGACTCGTACAGT
CCTCCCAACGAAAAGCATTTCTTCGATGAGAAACAATCGGAAAAATTTAT
GGATGATGATATCTCACCGACAACAACACAGCGTTATTCGAAGGGCCGGT
ATACACGTGATTATCAACCTGACCTCTATTCGCCTCGACATGATTAAGAC
AAAGACAAAGAAAgatcatatttcaaaatatcacaCACACAT
Run BLAST on NCBI

protein sequence of TCONS_00045414-protein

>TCONS_00045414-protein ID=TCONS_00045414-protein|Name=TCONS_00045414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
NYETEYQNIFARKNSSQNKLVSPLLEAVKDNQEFTDYYKQVLNKRIYAYS
PSMRESSANTSNDSYSPPNEKHFFDEKQSEKFMDDDISPTTTQRYSKGRY
TRDYQPDLYSPRHD
Run BLAST on NCBI

transcript from alignment at sc0007759:1..731-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045414 ID=TCONS_00045414|Name=TCONS_00045414|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0007759:1..731- (Clytia hemisphaerica)
GAAATTACGAGACGGAGTATCAAAATATTTTTGCCAGGAAGAACTCCAGC
CAGGTTCGCACTCAAAATTGTTTCATAAAAATGAAATTTACTTTTGAATC
CTAATTGAAACCTTTGGTGTTGTAACGTCTAGTAAGTTTGTAGTTCGATA
CTGAGGAAGAGGAGAATATTCTCTCCTATTGGATCATCTGTAATTTTTTT
CCTTTGATGCTTTCTTTAACAGAACAAGTTGGTTTCACCTCTGCTTGAGG
CGGTCAAAGACAACCAGGAATTCACGGATTATTACAAACAGGTTTGCTTT
TTTTGTCGACAGTTACTCTGCCATTGATGAAGAAAGGGTATTTCATTTAC
ATTTAAGCATTCAANGACAGTTACTCTGCCATTGATGAAGAAAGGGTATT
TCATTTACATTTAAGCATTCAATCGTCATTTCATTTTAATCTGTATTACT
GTTTTTCTTAGGTGTTAAACAAAAGAATTTACGCCTATTCGCCTTCGATG
CGAGAATCGTCAGCGAACACATCAAACGACTCGTACAGTCCTCCCAACGA
AAAGCATTTCTTCGATGAGAAACAATCGGAAAAATTTATGGATGATGATA
TCTCACCGACAACAACACAGCGTTATTCGAAGGGCCGGTATACACGTGAT
TATCAACCTGACCTCTATTCGCCTCGACATGATTAAGACAAAGACAAAGA
AAGATCATATTTCAAAATATCACACACACAT

Coding sequence (CDS) from alignment at sc0007759:1..731-

>TCONS_00045414 ID=TCONS_00045414|Name=TCONS_00045414|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0007759:1..731- (Clytia hemisphaerica)
GTGTTAAACAAAAGAATTTACGCCTATTCGCCTTCGATGCGAGAATCGTC
AGCGAACACATCAAACGACTCGTACAGTCCTCCCAACGAAAAGCATTTCT
TCGATGAGAAACAATCGGAAAAATTTATGGATGATGATATCTCACCGACA
ACAACACAGCGTTATTCGAAGGGCCGGTATACACGTGATTATCAACCTGA
CCTCTATTCGCCTCGACATGATTAAAACAAGTTGGTTTCACCTCTGCTTG
AGGCGGTCAAAGACAACCAGGAATTCACGGATTATTACAAACAGAATTAC
GAGACGGAGTATCAAAATATTTTTGCCAGGAAGAACTCCAGCCAGGTGTT
AAACAAAAGAATTTACGCCTATTCGCCTTCGATGCGAGAATCGTCAGCGA
ACACATCAAACGACTCGTACAGTCCTCCCAACGAAAAGCATTTCTTCGAT
GAGAAACAATCGGAAAAATTTATGGATGATGATATCTCACCGACAACAAC
ACAGCGTTATTCGAAGGGCCGGTATACACGTGATTATCAACCTGACCTCT
ATTCGCCTCGACATGATTAAAACAAGTTGGTTTCACCTCTGCTTGAGGCG
GTCAAAGACAACCAGGAATTCACGGATTATTACAAACAGAATTACGAGAC
GGAGTATCAAAATATTTTTGCCAGGAAGAACTCCAGCCAGGTGTTAAACA
AAAGAATTTACGCCTATTCGCCTTCGATGCGAGAATCGTCAGCGAACACA
TCAAACGACTCGTACAGTCCTCCCAACGAAAAGCATTTCTTCGATGAGAA
ACAATCGGAAAAATTTATGGATGATGATATCTCACCGACAACAACACAGC
GTTATTCGAAGGGCCGGTATACACGTGATTATCAACCTGACCTCTATTCG
CCTCGACATGATTAAAACAAGTTGGTTTCACCTCTGCTTGAGGCGGTCAA
AGACAACCAGGAATTCACGGATTATTACAAACAGAATTACGAGACGGAGT
ATCAAAATATTTTTGCCAGGAAGAACTCCAGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028992XLOC_028992Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045414-proteinTCONS_00045414-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045414-exon-sc0007759-1575043694:679..731TCONS_00045414-exon-sc0007759-1575043694:679..731Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1575043694:441..509TCONS_00045414-exon-sc0007759-1575043694:441..509Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1575043694:1..270TCONS_00045414-exon-sc0007759-1575043694:1..270Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1510915933:679..731TCONS_00045414-exon-sc0007759-1510915933:679..731Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1510915933:441..509TCONS_00045414-exon-sc0007759-1510915933:441..509Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1510915933:1..270TCONS_00045414-exon-sc0007759-1510915933:1..270Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1491911889:679..731TCONS_00045414-exon-sc0007759-1491911889:679..731Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1491911889:441..509TCONS_00045414-exon-sc0007759-1491911889:441..509Clytia hemisphaericaexon
TCONS_00045414-exon-sc0007759-1491911889:1..270TCONS_00045414-exon-sc0007759-1491911889:1..270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007759supercontigsc0007759:1..731 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.583	13.7889	5.61038	3.67387	63.8527	42.4279	36.5315	27.679	16.7118	16.3697	18.2487	15.0884	8.25153	9.14227	10.8868	10.4608	8.59085	9.504	16.0651	7.42463	6.7318	11.7116	7.86129	7.46397	16.3088	14.2253	3.07464	5.387	5.24303	7.69185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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